Plant Circular RNA Database

Detail information of Os03g0808100_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os03g0808100_circ_g.1
					
						ID in PlantcircBase
						osa_circ_022368
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 33782060-33784310  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0808100						
					
						Parent gene annotation
						
							Similar to Cellulose synthase-5. (Os03t0808100-01);Similar to Ce
llulose synthase BoCesA5. (Os03t0808100-02);Similar to Cellulose
 synthase BoCesA5. (Os03t0808100-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0808100_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0808100-02:5
Os03t0808100-01:7
Os03t0808100-03:1

General Information
CircRNA Name	Os03g0808100_circ_g.1
ID in PlantcircBase	osa_circ_022368
Alias	NA
Organism	Oryza sativa
Position	chr3: 33782060-33784310 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0808100
Parent gene annotation	Similar to Cellulose synthase-5. (Os03t0808100-01);Similar to Ce llulose synthase BoCesA5. (Os03t0808100-02);Similar to Cellulose synthase BoCesA5. (Os03t0808100-03)
Parent gene strand	-
Alternative splicing	Os03g0808100_circ_g.2
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0808100-02:5 Os03t0808100-01:7 Os03t0808100-03:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAGGACAATCAATCGGAGCACAATAACCATCCTGTACGGATTTATTCTGGATGACGAAATTGGC
ACTTTTCTCGATAGAGGTTGGCGTGTTTCATCATTCctcagttccccagtcacttttgtcttca
tagccacagctgataacatgtatggcctctttcagaagagattctggagttgcggattgaggaa
caccacca

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCAGTTCCCCAGTCACTTTTGTCTTCATAGCCACAGCTGATAACATGTATGGCCTCTTTCAGA
AGAGATTCTGGAGTTGCGGATTGAGGAACACCACCATATTCCATCAGAGTGGAGGCTACAAAAA
CACTAGATTGACCAAATCTTTTCTCTAAGCTCATTTGAGACATCAGTAGTGATTTCTCATCATC
AAATCCAGAACCTGCCACAAAAATGATGTGCCAGGTCAAATATATAGTGTAAGAGAAAAGTTAA
GCCTAGTGTCCCTCCCTTCCTAAGCATATACAGAAATACTGCGAAAAAAGTTGTGGGGTGCAAT
GCAATGGTGGTGGCCAAATATCACTAAAAATCTAAGAGCAAAAACATGTAATTGAACAAAAACC
AGACTCGATGGTACCTTCAATCCCTTCCTCTATATCTTCAAGATTAAAAACTGGCACAGAACTG
TCCACATGTTTGTGTGACTTTTTCTTTTCCGTGCTCTTCTCCTTCGACTTTTTTGTCTTCTTTC
GTCCCCCACAAAGCGAAGAGAAGTAACCTGGCCTCTTCTGCTTAATGGGGGGTTCATAACCATA
AAGAGCTGTTCTGTTGAACACACAACCGGTTCCCACATAAACTGGTCCTTGGAGACCATCGAGA
CCTCTCAAATTAATCTGCAGCAAGCAGAAATGCAGATAAGTTACTTGACAAACTCCAGAAATGT
TCAAATCCATCACATAGAAACATAAATATTGCTGATCCATCAACAGTTATTGATGTTTGCTAAA
GCGTGAAGTGAAGCATCCAAGAATCTTAAAGGGAACCAAGCTTACATCGAAAAACACGGTGTTC
CTGTTTGCATATCGATCATTTCTATCGATACCGTCAAACCTCTGAGGGAATTGGACATAACAGA
CACGCCTTCCTAGGTTTGGATCCATAAGGAAGCACATAGCCTCTCGGAGAGCTTTGCTATTGTT
GATGTAGTGATCACAGTCAAGATTCAACAAGTATTGTCCATTAGTAAGGACAGCTGATACACGA
ACCTGCAGTTTCAAATTCCACATATCAAGTAAATGAATTAAACAAGATACTTCTCACTTAAGCA
ACACCACTCTAGCTGCTACTCACAAGTGCATTCATAGCACCAGCCTTTTTATGGTGTTGGAATC
CAGGACGTTTCTCACGAGACACATAGACTAAACGAGGAAGCTCATTGCCTTCGGTATCAAGGCC
TCCACTATGACCAAGGAAAACCTGAGCATGACCAGACGTCAAGAGTAAGAAAATTGCTGGATCA
ATAACCACACCACAATGGCAATATCTAAGTGATATTTACCTGAATCATTCCAGGATGGTCTCTG
GTATTGTTACCAGGCCAAGGTGTGCCATCTTGCATAATCCATCCTTCCTCAGGAACTTTCTGTG
CCTTGGCGACGAGAGCATTAACACGAACTTTAAATTCTTCATATTCCCTCTGGATTTTGGTTTT
GCAACAGACATTAATGCGAGATTACACCAAAAAAAAAACAACAAAAAAGTACACACATATAAAC
CAAATTTACCTTCATGGCACGACGATCTTTAACAAAAGAAGCCTGAACTTTGTCTTTCAAGTAA
TCAATTTTCTGTGCAAAGTACCACTCTGGAGCTCTGGGTTCTATGCTGTACTTTTTACAGAACG
GTACCCATTTTCTAGCAAATTCTGAAGTCTCAGCAAGCGCATCAAATGTTAACATTGCAGCTCC
ATCATCAGACACATAGCAAGATACCTTATCAACAGGGTAATCCACAGCAAGGATGGAGAGCACA
GTATTGGCAGTGACAAGAGGAGGTTCTTTCATAGGATCCACAGTACTGACAAAAATGTCAACAG
GAGCCAATTGAGATGGTTCACCTTCCCGGTCATACCTGAGAGTGCAAGTGATATTTTGTTATTG
TCAGTAATCAGTACTACAGTGCTAACGCAGGAATGGTGTATCAGAGGTAAATATTGTACATCAC
CTTAAAGCCAGCCTATCCAGGTAAGTTTCACGGTTGATTGGGGACCACTTGGGGAACTGATCCA
GAATCCAGGATAGAGCAAACCAAATCTCACATATGACAGAGAGCAACCATAGCGGGTATGCATT
ACGCACAGGATTTGTGATACGGTAGTGCAAGAATATACATAGGACAATCAATCGGAGCACAATA
ACCATCCTGTACGGATTTATTCTGGATGACGAAATTGGCACTTTTCTCGATAGAGGTTGGCGTG
TTTCATCATTC
						
					

			
		

Sequences
Splice junction sequence	TAGGACAATCAATCGGAGCACAATAACCATCCTGTACGGATTTATTCTGGATGACGAAATTGGC ACTTTTCTCGATAGAGGTTGGCGTGTTTCATCATTCctcagttccccagtcacttttgtcttca tagccacagctgataacatgtatggcctctttcagaagagattctggagttgcggattgaggaa caccacca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCAGTTCCCCAGTCACTTTTGTCTTCATAGCCACAGCTGATAACATGTATGGCCTCTTTCAGA AGAGATTCTGGAGTTGCGGATTGAGGAACACCACCATATTCCATCAGAGTGGAGGCTACAAAAA CACTAGATTGACCAAATCTTTTCTCTAAGCTCATTTGAGACATCAGTAGTGATTTCTCATCATC AAATCCAGAACCTGCCACAAAAATGATGTGCCAGGTCAAATATATAGTGTAAGAGAAAAGTTAA GCCTAGTGTCCCTCCCTTCCTAAGCATATACAGAAATACTGCGAAAAAAGTTGTGGGGTGCAAT GCAATGGTGGTGGCCAAATATCACTAAAAATCTAAGAGCAAAAACATGTAATTGAACAAAAACC AGACTCGATGGTACCTTCAATCCCTTCCTCTATATCTTCAAGATTAAAAACTGGCACAGAACTG TCCACATGTTTGTGTGACTTTTTCTTTTCCGTGCTCTTCTCCTTCGACTTTTTTGTCTTCTTTC GTCCCCCACAAAGCGAAGAGAAGTAACCTGGCCTCTTCTGCTTAATGGGGGGTTCATAACCATA AAGAGCTGTTCTGTTGAACACACAACCGGTTCCCACATAAACTGGTCCTTGGAGACCATCGAGA CCTCTCAAATTAATCTGCAGCAAGCAGAAATGCAGATAAGTTACTTGACAAACTCCAGAAATGT TCAAATCCATCACATAGAAACATAAATATTGCTGATCCATCAACAGTTATTGATGTTTGCTAAA GCGTGAAGTGAAGCATCCAAGAATCTTAAAGGGAACCAAGCTTACATCGAAAAACACGGTGTTC CTGTTTGCATATCGATCATTTCTATCGATACCGTCAAACCTCTGAGGGAATTGGACATAACAGA CACGCCTTCCTAGGTTTGGATCCATAAGGAAGCACATAGCCTCTCGGAGAGCTTTGCTATTGTT GATGTAGTGATCACAGTCAAGATTCAACAAGTATTGTCCATTAGTAAGGACAGCTGATACACGA ACCTGCAGTTTCAAATTCCACATATCAAGTAAATGAATTAAACAAGATACTTCTCACTTAAGCA ACACCACTCTAGCTGCTACTCACAAGTGCATTCATAGCACCAGCCTTTTTATGGTGTTGGAATC CAGGACGTTTCTCACGAGACACATAGACTAAACGAGGAAGCTCATTGCCTTCGGTATCAAGGCC TCCACTATGACCAAGGAAAACCTGAGCATGACCAGACGTCAAGAGTAAGAAAATTGCTGGATCA ATAACCACACCACAATGGCAATATCTAAGTGATATTTACCTGAATCATTCCAGGATGGTCTCTG GTATTGTTACCAGGCCAAGGTGTGCCATCTTGCATAATCCATCCTTCCTCAGGAACTTTCTGTG CCTTGGCGACGAGAGCATTAACACGAACTTTAAATTCTTCATATTCCCTCTGGATTTTGGTTTT GCAACAGACATTAATGCGAGATTACACCAAAAAAAAAACAACAAAAAAGTACACACATATAAAC CAAATTTACCTTCATGGCACGACGATCTTTAACAAAAGAAGCCTGAACTTTGTCTTTCAAGTAA TCAATTTTCTGTGCAAAGTACCACTCTGGAGCTCTGGGTTCTATGCTGTACTTTTTACAGAACG GTACCCATTTTCTAGCAAATTCTGAAGTCTCAGCAAGCGCATCAAATGTTAACATTGCAGCTCC ATCATCAGACACATAGCAAGATACCTTATCAACAGGGTAATCCACAGCAAGGATGGAGAGCACA GTATTGGCAGTGACAAGAGGAGGTTCTTTCATAGGATCCACAGTACTGACAAAAATGTCAACAG GAGCCAATTGAGATGGTTCACCTTCCCGGTCATACCTGAGAGTGCAAGTGATATTTTGTTATTG TCAGTAATCAGTACTACAGTGCTAACGCAGGAATGGTGTATCAGAGGTAAATATTGTACATCAC CTTAAAGCCAGCCTATCCAGGTAAGTTTCACGGTTGATTGGGGACCACTTGGGGAACTGATCCA GAATCCAGGATAGAGCAAACCAAATCTCACATATGACAGAGAGCAACCATAGCGGGTATGCATT ACGCACAGGATTTGTGATACGGTAGTGCAAGAATATACATAGGACAATCAATCGGAGCACAATA ACCATCCTGTACGGATTTATTCTGGATGACGAAATTGGCACTTTTCTCGATAGAGGTTGGCGTG TTTCATCATTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.313563501

Conservation Information
Conserved circRNAs	NA
PMCS	0.313563501

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							33784262-33782087(+)
33784242-33784307(-)
33782108-33784307(-)
						
						Potential amino acid sequence
						
							MTKLALFSIEVGVFHHSSVPQSLLSS*(+)
MVIVLRLIVLCIFLHYRITNPVRNAYPLWLLSVICEIWFALSWILDQFPKWSPINRETYLDRLA
LRYDREGEPSQLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFD
ALAETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQASFVKDRRAMKREYEEFKVRVN
ALVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPG
FQHHKKAGAMNALVRVSAVLTNGQYLLNLDCDHYINNSKALREAMCFLMDPNLGRRVCYVQFPQ
RFDGIDRNDRYANRNTVFFDINLRGLDGLQGPVYVGTGCVFNRTALYGYEPPIKQKRPGYFSSL
CGGRKKTKKSKEKSTEKKKSHKHVDSSVPVFNLEDIEEGIEGSGFDDEKSLLMSQMSLEKRFGQ
SSVFVASTLMEYGGVPQSATPESLLKEAIHVISCGYEDKSDWGTEE*(-)
MLSAVAMKTKVTGELRNDETRQPLSRKVPISSSRINPYRMVIVLRLIVLCIFLHYRITNPVRNA
YPLWLLSVICEIWFALSWILDQFPKWSPINRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPM
KEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRA
PEWYFAQKIDYLKDKVQASFVKDRRAMKREYEEFKVRVNALVAKAQKVPEEGWIMQDGTPWPGN
NTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGQY
LLNLDCDHYINNSKALREAMCFLMDPNLGRRVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRG
LDGLQGPVYVGTGCVFNRTALYGYEPPIKQKRPGYFSSLCGGRKKTKKSKEKSTEKKKSHKHVD
SSVPVFNLEDIEEGIEGSGFDDEKSLLMSQMSLEKRFGQSSVFVASTLMEYGGVPQSATPESLL
KEAIHVISCGYEDKSDWGTEE*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	33784262-33782087(+) 33784242-33784307(-) 33782108-33784307(-)
Potential amino acid sequence	MTKLALFSIEVGVFHHSSVPQSLLSS(+) MVIVLRLIVLCIFLHYRITNPVRNAYPLWLLSVICEIWFALSWILDQFPKWSPINRETYLDRLA LRYDREGEPSQLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFD ALAETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQASFVKDRRAMKREYEEFKVRVN ALVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPG FQHHKKAGAMNALVRVSAVLTNGQYLLNLDCDHYINNSKALREAMCFLMDPNLGRRVCYVQFPQ RFDGIDRNDRYANRNTVFFDINLRGLDGLQGPVYVGTGCVFNRTALYGYEPPIKQKRPGYFSSL CGGRKKTKKSKEKSTEKKKSHKHVDSSVPVFNLEDIEEGIEGSGFDDEKSLLMSQMSLEKRFGQ SSVFVASTLMEYGGVPQSATPESLLKEAIHVISCGYEDKSDWGTEE(-) MLSAVAMKTKVTGELRNDETRQPLSRKVPISSSRINPYRMVIVLRLIVLCIFLHYRITNPVRNA YPLWLLSVICEIWFALSWILDQFPKWSPINRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPM KEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRA PEWYFAQKIDYLKDKVQASFVKDRRAMKREYEEFKVRVNALVAKAQKVPEEGWIMQDGTPWPGN NTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGQY LLNLDCDHYINNSKALREAMCFLMDPNLGRRVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRG LDGLQGPVYVGTGCVFNRTALYGYEPPIKQKRPGYFSSLCGGRKKTKKSKEKSTEKKKSHKHVD SSVPVFNLEDIEEGIEGSGFDDEKSLLMSQMSLEKRFGQSSVFVASTLMEYGGVPQSATPESLL KEAIHVISCGYEDKSDWGTEE*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0808100_circ_g.1

Address

Any questions?

Supported by