Detail information of Zm00001d050403_circ_g.2


General Information
CircRNA Name Zm00001d050403_circ_g.2
ID in PlantcircBase zma_circ_001711
Alias circ2253
Organism Zea mays
Position chr4: 86240702-86241118  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d050403
Parent gene annotation Chlorophyll a-b binding protein 4
Parent gene strand +
Alternative splicing Zm00001d050403_circ_g.1 Zm00001d050403_circ_g.3 Zm00001d050403_circ_g.4 Zm00001d050403_circ_g.5 Zm00001d050403_circ_g.6 Zm00001d050403_circ_g.7
Support reads 11
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d050403_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACAGCCTGCCGCCGCACGAGTGCGGCTACCCCGGCAGCGTCTTCAACCCGCTCAACTTCGCGC
CCACGCTCGAGGCCAAGGAGAAGGAGCTCGCCAACGgcctgccgggtgacaatggcttcgaccc
gttgggcctggcggaggacccggagaacctgaggtggtacgtgcaggcggagctggtgaacggg
cggtgggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCTGCCGGGTGACAATGGCTTCGACCCGTTGGGCCTGGCGGAGGACCCGGAGAACCTGAGGTG
GTACGTGCAGGCGGAGCTGGTGAACGGGCGGTGGGCGATGCTGGGCGTGGCCGGGATGCTGATC
CCGGAGGTGCTGACCAAGGCCGGGCTGATCAACGCGCCGCAGTGGTACGACGCCGGCAAGTCGG
AGTACTTCGCGTCGTCGTCGACGCTGTTCGTGATCGAGTTCATCCTGTTTCACTACGTGGAGAT
CCGGCGGTGGCAGGACATCAAGAACCCCGGCAGCGTCAACCAGGACCCCATCTTCAAGAGCTAC
AGCCTGCCGCCGCACGAGTGCGGCTACCCCGGCAGCGTCTTCAACCCGCTCAACTTCGCGCCCA
CGCTCGAGGCCAAGGAGAAGGAGCTCGCCAACG
Conservation Information
Conserved circRNAs NA
PMCS 0.30683689
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b