Detail information of BGIOSGA015667_circ_g.3


General Information
CircRNA Name BGIOSGA015667_circ_g.3
ID in PlantcircBase osi_circ_014374
Alias Chr04:1958970_1961701(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 1938092-1940823  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA015667
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015667_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA015667-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGATCTTTCCAGATTAGATGGACCAGCAGTTTCATTGGTTATTTCAACATTATTAATCCCAC
CTGGCATAGTGCTTGATCTGGGGAGGCCCCTGTCATctcgatatccagccgcttgtttcacacg
agaaagaggatgggggaattcactagttggcctgaacaagcagcacaagttagatctccaaatg
agaatatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCGATATCCAGCCGCTTGTTTCACACGAGAAAGAGGATGGGGGAATTCACTAGTTGGCCTGAA
CAAGCAGCACAAGTTAGATCTCCAAATGAGAATATTCCTCAGCAAATGTGCTCTTCAAAGAGGA
AGCAAAACAATAGTGACTCACGTCCATGGCATGGTAAAGAATATATGAATAGGTACTTTTAGTG
CCTCTGCCACATGAGTATGTCCTGAATAATCGTTAAGGTCAGCAGCAAAGAAACATTTATAAAT
TTTCATAGAAGTGAATTGCAATTGGCTACTGGACCATAAAATACAAAACATGCAAAAAAATTCA
CACTAGAGCACCTTGTAAACACATCATTGCCTAATCATGTGAGCTGGAAATGACTATGATTGGT
TCCAAAGTGATAAACACAGAAAAATCCTGAAAAGAGATGCCTCCAGAAAGATTGGCGAAACAGA
AAGAGCTTTTAAAGATGTCAACTTCCCAAGTATATTACTAGGTCAGTCTGCCTATTAATTGCAC
ACCAAAGAAAAGCATCACCATCATAAGGCATGAATCAAGAAATGATTGTTCTGAAATGGATGCC
TCAAATCAGAAAAATAAACCAAATTGAAGCGGTAAGAAAGAATTGTACATGAGCAAACTTATAA
AAATTTAAGATCTTTTCGTTTTAAAAAATATATGATCTTGACTGCACCATAAAATATGATGACG
CTGATCCCGTTGGATCCTAACGTGCATAGGATCTTTTAAATTCTGACGACCATGCAAATTAGTA
ACTTATAACATATAACCTTCACAGTAACAATTTTCACAGTGCAATACTAAGACTCCAAGCATGT
CAGGACAAAAAAAAAATCCTGCCTTGGATCCTGATCCTCACAACCTTGTACATGAGTATGTCAG
AAATTGGTGTTTTTTAGAGTAGTAGGTACTTAGTTGAGCATATAATAAACAAACTTGGAGTTAC
ACTTGTAAGGTAGAGAGAAAGTAAAGCAAAGTGCAAGAAATCAATCCAAAGCTGGTAAGATATA
CTGACCATATGCTGGAGGGTTAGCAATGATAGCATCCACTTTGAAAGGAATACCAGTGTCAGGA
TCAGGCTCCTTGCACGCAGGTAGCAAAGAGAATATAATTTCTTTCATCTGTTTCCTCTGAATAG
GAATTTCTGAAGGACCAGAAGGCAAGAATCCTTTATTCTTCACCATGTCTGCTCAAATATGAAT
ATACCAAATATATTAATCATCGTGACGTAGAAACTGAAAAAAATCAACTATGTGAATACAAGGA
TTTATTTTCATACATTCAGCAAGTATTTTTGGATCACCGCCAAGAGGGAAAAACTCCAGACCAG
CCGTTAGAACGAACTCCTTAAAGTTTGCATGGGTTGCCAATCTCACACGGTGTCCATAATCCTA
AAAAAAACAGGTAATGGATAATCCTAGTCATACAGAAACCATGTATTTAGAAACATTAAGCTTG
AGAAGCAAAATAGTTCACCTGATGAGAGATAAAATAATGTGAAATTAACAAACAATGGTAGCTT
TTGATCTAACCTGTAAGCGTTTGCCTATAGCAATGAATGGCTGAACATCACCTCTTGTGCCCAC
AATAAGAATAACAATTTGCATAGGAGGCCTCACAGGTATGTCTGCTCCATCCAATGGTTCCTCA
ACAGTAACATCACTATAGCCATCATATGCTACACCATCAGTTGTACTTGTTTCCAGAGAACTTG
GCACATCAACCACCACAGTTCCATCATGTTTCACTGTAGCTATCCGATTTATCATTTTGAGCTA
CAATAAAATGTAAAATATCACAAAAAACTGTTGAACAACATCAAGCATCCAGATACAAAAGAGT
ACATCTGGCACTGAGTTCCTGACTATTCAAAGCTACCATGCAGTGTATCACAATACACAATTGT
TGTGAAAAAAAGGCTGAATTGGCTGCATAATAATCTGAATAATCAACTATTTTTCAATCAGTTG
GAATGTTTCTCAAGTTTAATCGTAAAATAGACTTTACTCCCTAATTACAGTGAACTAATATCTG
ATCTCATGTAGTAGTGTTTGCTTTGGAGATGAAGCAGTGAAGCACAAAATACAACATGTCAAGC
TTAGCAAGTGCTGTTTTTAAGTGGTTATAACATGTCATAATTTTCATGATTTAATTGACTTTAG
TTATAAATAAATAAATTAGTAGAGCATAACTATCAAAATTCTGATTAATCAGCAGTATCACACA
TAATCGTTTAACAGATATAGCTATCTTAGCCCTCACCTCTGCAACAGGCTCCTAGCCCTTTTTC
ACAATGCTGCATTATACTAAAATGTATCAAATTCAGATATAGCTATCTTGTCTGCGCTCAGCAG
ATAAGGCTAACAGTTCACGTGACAGTTCAAAATGGCTTCTCTTATATGAACATATACATGCTCC
AAATTTCAAAGGTCAAATGCATGAAGAAAAGGAAGCTACAAGGGTAAATAGATGAAACAGGGTG
CATTGCAAATGAAGGAAAGGCAAGACATAGGCAACAGGACTATGTTATCCGCACCTTCTTTTTT
AGGGAAATTTTATCATCAAATAACTGTTTGGTAGGATCATCAGCTGGATTGTTTTGTCGACGCC
TCTCTGTTCTTGATCTTTCCAGATTAGATGGACCAGCAGTTTCATTGGTTATTTCAACATTATT
AATCCCACCTGGCATAGTGCTTGATCTGGGGAGGCCCCTGTCAT
Conservation Information
Conserved circRNAs osa_circ_022962
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021