Detail information of PGSC0003DMG400031535_circ_ig.1


General Information
CircRNA Name PGSC0003DMG400031535_circ_ig.1
ID in PlantcircBase stu_circ_001196
Alias chr09:60167398|60171944
Organism Solanum tuberosum
Position chr9: 60167399-60171946  JBrowse»
Reference genome 3.0.38
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing PGSC0003DMG400031535_circ_ig.2
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   AA-GC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCAAGGCAATTATGTTTCTTGGTCTTTTTTTGGCTATTTTCTTAATGATAAGCTCTGAGGTT
GCAGCTAGGGAGTTGGCAGCTGAGACTTCCAATGGTggtaaacgttgatggacattattatgga
ggcggctatggtaagggccatggaaaacctaagaaatgttatagttgctgcaagaaatacaaat
atggatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAAACGTTGATGGACATTATTATGGAGGCGGCTATGGTAAGGGCCATGGAAAACCTAAGAAA
TGTTATAGTTGCTGCAAGAAATACAAATATGGATGCAAAAAATACTGCTGCTCTTATGAAGAAT
ATGTGGCTGCCCAGACTCACAACTAAATAATTAATTATTATTGTAAACTTTTGAAATTAAGTGA
CAAGATACTAATAATCTTGCTACTTAAGACCCTTTGCTTGTAACAAGTATGAATAAAGCCATTC
ATTTACAATGAATGGTTGGTCATGATGTAATGTTTTGTTGTACAATATATCATATTGTGTTAAA
AATGTTTCCCTAATGTTAAGATTTTCTTCTTATTTTTACTTAAGTATTCTATCATCCCTTAATC
ATATGTTTCAAGATTGAATCCTGGTCCGAATATAGAATTGTCTTTGTTACATAGTATTTTACTC
TATTTGAATTTTTTACCGTGAATCCAATTTATTTAAGGCATCTCTAATTAAGGATATTGAACAT
TGAGGGGAAATTTTAAAATATTTAATTTTCTTGTTATTTAATAAAGTAAGGAAAACAATGCAGA
AAAAAAGAAACAATTTGTTCTTTTCTTTGTATAATATTTAAAAAAATATAATCACAGAAGAAAT
AAAATTAAAGCATGGGGGACAAACGACTAATAATGTCAAATCATCACTTATTTTTTTATTTCTA
ATGAACACTTTAGTCAGGGCTGAAATCGAAATTTTATGAAAACATCACAACATATAAACAAAAA
TGAACACATGAGTAAATTTTAATGATTCAATATATGATACAATGTAGTAGCTTTTTTCGACGAA
GGAGAGTCAATTAACAATATTAGATAAGGATGGTTACATCATTAATATTCACGATCACCATTAA
GGGCGTATTTACCTTAAGCTCGCAATATATATATGCAACGTCAACCAAATAACTCACATTAGGG
GTGTACAAAAATGAACCGAAAACCGAATTAAACCGCAAATCGAGAAAAAAAAATCCGACTAGTG
GTTGGTTTGACTTGGTTTGGTATTGAAAAAAAAACCCAACTATATTTGGGTTGGTTTGGTTTTA
ACTAAAAAAAACCAACCCGAGACCAAACCAACACGTCATTATATATATAATTTTAAAATTTATT
TTATATTTTATACATAAAAATATTTACTTTGAAATAATTTTTAAATCTTTCTTATACTTTTTCA
TAGTTTTTATCTTTTAATATATTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAA
ACAAAAATACAGAATGATTATTATGAAAAAAATAAGTGAACAAATGGGGTTCTTTTGTATATTT
TATTTTTTGTTATTGCTGAATTTGCCGAACTTTTACAGCTTGTTTGAGTACTTGTTACCTATAT
AGTTGTATTTTGGTGGCGAAATGGTCTAATAGACCCCTGTACTTGTATGAGTTTGTATTGTGAA
CCCTTCTACTTAACTCTTTATCAATTGAACCCTTAAACTTATAAAACACAATTTATCAAACCCC
TCTGACCATTGACTAGGCTTATGTGGCATCAATATGGTTGAGTTGGCAAGAGTGTGTGAATTCA
CTCTCGTTAAGGCGAGTGATATCCTATTTAAGTTTTAAAAAATATTAAAAAATTAAAAAAAAAT
AAAACAATAAAACAAAAAAACTTTAAAAAAAATAACTAAAAAAGGCTTTCTTCTTCCGCCAACA
GGTTCACATCCATTTTTGGCCATCTCCATCCCTGTCCAATCCATTTTTCTTTCTTCTTCACACT
CTTGTCATCTTCTTTAGCAGATCTTCGCATTGGCACCTAGAGAGAGACGACGCAGGTCAGTGGA
AGAAGAACGAGGCGGTTGAGGGTAGGATCTGGTCACGACAGCGAAGAGGTTTTTCGGTCAGATC
TGGTGGCCATGGTGCGACGGAGATGAAGACGGGTGAGGAAGAGGGCACGTATGGTCGCCGGCAA
GAGTTGCGACGACGACTGAGACGGCGGCGAGGAGCCTCCTAGAATATTTGTATGCCGGAGACAG
TAAGGGGTTTCTTGGCCTTCTGATACTCCGGAGAGGATGAAGAGCATATCGGTCGGTGATGGTG
AGGGGAGAGAAGCTAGTGCGGTGGCTTAGGGTTTCTAGATTTGTGGAGGTTAGAGAAGGAGAAA
AGAAAATGGTAAGGGTGTGCGATGAAGATGGAGGTTGGTGGGGAGATCGTATTTGTGGTCTCGC
CGGCAAGAGGAGCGGCAACAGCAGCGACTTTTTCCGACAGTTGGGCCATTTCACGGTGAAAATG
GAAGATGATGTGAGGAGACCCAAACTTTTAATTTAAAATAATAAATTAAAATTTAATTTGTCAA
AATTACATCAAAACTTTATGATTTTTCTTTTGTTAAAAAAGAAATTATTATATAAAAAAAAAAT
GATGTGGCAAATTTTATCTGACATAGCGTATGACATTAGCGTGATTGAGAATCACGATGAGTTG
AAAGGGTTCAATAGGTTGAGTTTAGATGGGTTCAGGGGTCCATATGACAAAGAGGTAAGTAGAA
GAATTCACAATACAAACGCATACAAGTACAAGGGTCCACCAGATCATTTTGCCTATTTTGGTAG
GACTAAAGAAATATTTGAAGTACAAGTAAATTATATGTTCGTATGAATACTTTACCGGAAAAAC
CCGAAAAATCCGAGGTTGAAAAACCCGAGTTTTATTGATTTGGTTTGGTTTATAGATTTAAAAA
TTCAACACAAATGGTTGGATTTGATAATTGAAAAATCCGAACCAACCCGGTCATGTACACCCCT
AACTCACATGATTATGAATCAAGGAAAAGAATAAATAATTTTCGTCATGTTGTGCAAAAATATA
TATTTCTAATCTTATTAATATTAGGTTAGGGGGAAACCTTTTTTGGGTTATTTATTATTTCTAT
CTATATTTTGTGTATATATATAAAAAAAAAATTGCATAATATATAAACGTATCCTTTAATTTGG
TCTCAACTGACATCTAGCCCTCCAACTTTGGATGTGCACAAGTAGGGACTTAAACTTGTATAGA
GTTGAACAAGTAGACACACTAGTCCTACGTGACATAATACGCATAGGACACCATGTACGACACA
AATTATCATGTAGGACATGTATATCTACTTGTTCTATTATATATAAACTTAAGTGTTTACCATT
AGTACACATCCAAAATTAAAGGTTATAAATATCGATTAAGGTCAAAATAAAATAATATTTTCAT
GTATTATACTTGTTTTTTTAGAAGACTTTTCTTGAGTTATAAAGCAATAAAGAGAGTTGGCCCC
TCTTATTTAACTTGATACGTTGTACATTAAAAGAGTCATTAAATACGTCATTTAAAGTCTTTGA
GTATTGACCAAATCCAAGAGTATATATACACCACTATTTCTAGATATTTTAGGATAAGGTAGTC
CTACAAGTTAGCATATTTTAAATTACTTTTTTGCATAACTATCCAAAAATATACTATTAACACG
ACGATTTATTATCGAAATATATAATACCCATCACATGCATATTATTTTTTAAAGTTATTTTAAT
GTTTGATTTTCTACTAAGTATTAATCTTTGTTTTTAGTTTGTTTTGTCGGATGGTGTACGTAAG
CCACTTGGTCATATTGATGTGATATATTTACAAATATTTTTTCGAAAAAATAAGTAAATTTTTA
TCTATTCTTATGTTTTTTTATAGGGAAAAAGTCTGAAATATATTCGAACTTTAGCCATTCTACT
TAATTTTACTAATGGTGTTATAGTATTAACGTATGTACTTGTGCCTTTCTACTTTTACTAATGG
TGTTTTGATTATTTTTAACTTTTAATTTGATTATTTTGAATATTTAAGATTTGTAAAATACAAA
CAGATACAATTTATAAATATTATGTTTTTTTCATCTTAACAAAATATTACTTACGACTCCACCA
TAAAATCAACACTCTATTTATCTACCACTTGTAGAGCAAGTTGTTCATTTCTTTGGTCCATACA
TAATTGCAATCCGTATATGTATCCCCTCACACCTCTAATTATTTATGCATTCAAATCTTATTAT
AAATAGAGCCCAAAAATGCATTAGTTTCTTCATCCCTCAATTTTCATATTTCATAAGTACTAAG
TTTTGAACAAAAGAAAAATTAAAAAGAATGGGTTCCAAGGCAATTATGTTTCTTGGTCTTTTTT
TGGCTATTTTCTTAATGATAAGCTCTGAGGTTGCAGCTAGGGAGTTGGCAGCTGAGACTTCCAA
TGGT
Conservation Information
Conserved circRNAs NA
PMCS 0.66463508
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018