Detail information of AT2G04235_circ_g.1


General Information
CircRNA Name AT2G04235_circ_g.1
ID in PlantcircBase ath_circ_012760
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1452125-1452632  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G04235
Parent gene annotation unknown protein
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04235.1:3
AT2G04235.4:3
AT2G04235.3:3
AT2G04235.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATGTTCCAAAAGTGCAGATATGCAAGCTGGAAGATATATTAACACACATGAAAAAGGTTCAT
TTGTGTGAGATGCTTTGTCTACAAATTCAATCTCAGggaccatccagattgaaaagaaaagcag
aagatgttgattgtgctgctagaaattgtagccccaaagtcgagagaagtacaaagtatatttc
gaattcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACCATCCAGATTGAAAAGAAAAGCAGAAGATGTTGATTGTGCTGCTAGAAATTGTAGCCCCA
AAGTCGAGAGAAGTACAAAGTATATTTCGAATTCAGTGATGGAACACCCTGATGGAAACATTGA
TGCTAACGATTGCCGCAGAGTTCGTGAACAAGTGAACTGGGTAGAAGTAAGTACTGTTGATAAC
CTCTTATGTTAACGGATGTTAGTCCCTCTTTTCTTCATACAATTAAGTTATTGTTCCACTACCT
TGCAGATTCCAGGAAAAGTATCAAAGGAAATCAATCAAATGCTTGCTCCATTGGCAGATAAGCT
GAACTCAAGACTGGTATGTTATTCCTCTCTGTGGAAACCCAATCTGGCTACTGAGACTGTTTCC
TTTTAGCTTTTATAGTTTCAGTACTAATGTTCCAAAAGTGCAGATATGCAAGCTGGAAGATATA
TTAACACACATGAAAAAGGTTCATTTGTGTGAGATGCTTTGTCTACAAATTCAATCTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.178559712
Functional Information
Coding potential Y
Potential coding position 1452227-1452629(+)
Potential amino acid sequence MEHPDGNIDANDCRRVREQVNWVEIPGKVSKEINQMLAPLADKLNSRLICKLEDILTHMKKVHL
CEMLCLQIQSQGPSRLKRKAEDVDCAARNCSPKVERSTKYISNSVMEHPDGNIDANDCRRVREQ
VNWVEIPGKVSKEINQMLAPLADKLNSRLICKLEDILTHMKKVHLCEMLCLQIQSQGPSRLKRK
AEDVDCAARNCSPKVERSTKYISNSVMEHPDGNIDANDCRRVREQVNWVEIPGKVSKEINQMLA
PLADKLNSRLICKLEDILTHMKKVHLCEMLCLQIQSQGPSRLKRKAEDVDCAARNCSPKVERST
KYISNSVMEHPDGNIDANDCRRVREQVNWVEIPGKVSKEINQMLAPLADKLNSRLICKLEDILT
HMKKVHLCEMLCLQIQSQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017