Detail information of BGIOSGA014395_circ_g.2


General Information
CircRNA Name BGIOSGA014395_circ_g.2
ID in PlantcircBase osi_circ_014748
Alias Chr04:31305311_31305761(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 29442688-29443138  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014395
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   AT-GG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGAACATGGTTAAAACAGTTAGCTGTAAGCTTCAGTGTGCTTAGAAGGAACACTCCATGTAA
TTGACTACCACTAGCAAAATAGAATCTATTACTCACttcaccatccaaagagagagaaaatagt
ttcaggtcaaatgtatttataaacaatccattgagcaattattgatgtgtttttataaagatta
tgcagctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCACCATCCAAAGAGAGAGAAAATAGTTTCAGGTCAAATGTATTTATAAACAATCCATTGAGC
AATTATTGATGTGTTTTTATAAAGATTATGCAGCTCTCTTGCGTATTCGAGAAAAAAGTGTTTT
TACAAAGATATTGGTAAATATCACATTAAACTTCTAATTTGATCAGTTTTTTTAAAAAAACTTC
TAATTTGATCACTGTGGAGATAAGGGGCTGAAACAAATTATAAACATGATGAATTAATCATAAA
GATGTATGTGATGACATGTGATTCAATCCCTCGAATGAAAACAGAGCTCTAAAGGAACAACAAA
GTTTGCATCATTATGAAGAAAAATGGGATGCTGTGAACATGGTTAAAACAGTTAGCTGTAAGCT
TCAGTGTGCTTAGAAGGAACACTCCATGTAATTGACTACCACTAGCAAAATAGAATCTATTACT
CAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021