Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d022143_circ_g.2 |
ID in PlantcircBase | zma_circ_009470 |
Alias | Zm07circ00091, zma_circ_0002557 |
Organism | Zea mays |
Position | chr7: 171097058-171099062 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d022143 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | Zm00001d022143_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d022143_T017:1 Zm00001d022143_T007:1 Zm00001d022143_T006:1 Zm00001d022143_T019:1 Zm00001d022143_T015:1 Zm00001d022143_T003:1 Zm00001d022143_T016:1 Zm00001d022143_T004:1 Zm00001d022143_T022:1 Zm00001d022143_T021:1 Zm00001d022143_T002:1 Zm00001d022143_T013:1 Zm00001d022143_T020:1 Zm00001d022143_T009:1 Zm00001d022143_T011:1 Zm00001d022143_T008:1 Zm00001d022143_T014:1 Zm00001d022143_T001:1 Zm00001d022143_T005:1 Zm00001d022143_T012:1 Zm00001d022143_T018:1 Zm00001d022143_T010:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.219716233 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
171097078-171097099(+) 171098984-171097099(+) 171097107-171099041(-) |
Potential amino acid sequence |
MSLCQRRPDISPQTAQPAVSSHWKVFDDGNVRGSSSSDMSIDEPLVDLSESKNKSTVSGSGSQV HRLSNIQGLESAAAQQPKPTIQQAVDKQEAETDASPAPSKGELSRRLSVKDRINMFESQKKEQT PSSGNSNSAGTGRVVPGKGEHRRVPSGASMEKLVRRWSSVSDMSIDLSNNESSSLNDKKDNGTP AGTPTSTDLEADSKVRANEDSNGQKDSITSHSWPCQKDNVPMDLATTDLCPPSILSNTLAPHKE SIYGDGAENDMVMNSSIESEASFGKEPGVIQGHTRMSNHATSNVSTQDRLKSSAKSVEEALLKN KVIVTSASSEEHVCMIDKEITAVAHEVPVASEQIPQNDIRGLHTKDIHTEAEVTGRKDQPSRSF GRVSGGVNPKPKASSNSRANAKGSSVRDAIASTETEFRDVSLQRNRLPRKSEDVGKKVTAGSDS DCSGRQGKNLSRQSSITDQELNLQARVTRPGKGNQDRHGELQMKANELEKLFAEHKLTSSRRGK PTDVQVESTPMVSEVKPTMVLHETIHTKQVVKESITVNDFDAGELLKMVNNQEFNISTPQKLGI LSLEESRGKFYEHYMQKRDAKLKEGWKLQREEKEAMLKAMHDSLERSKAELLTKFSRSADVPDS TYVSHCSQKIPPSRSARKNKDQRSMHKVHVTLPAAS*(+) MSLTQLMFPIVLRRFLLRDQQEKIKISEACTKFMSLCQRRPDISPQTAQPAVSSHWKVFDDGNV RGSSSSDMSIDEPLVDLSESKNKSTVSGSGSQVHRLSNIQGLESAAAQQPKPTIQQAVDKQEAE TDASPAPSKGELSRRLSVKDRINMFESQKKEQTPSSGNSNSAGTGRVVPGKGEHRRVPSGASME KLVRRWSSVSDMSIDLSNNESSSLNDKKDNGTPAGTPTSTDLEADSKVRANEDSNGQKDSITSH SWPCQKDNVPMDLATTDLCPPSILSNTLAPHKESIYGDGAENDMVMNSSIESEASFGKEPGVIQ GHTRMSNHATSNVSTQDRLKSSAKSVEEALLKNKVIVTSASSEEHVCMIDKEITAVAHEVPVAS EQIPQNDIRGLHTKDIHTEAEVTGRKDQPSRSFGRVSGGVNPKPKASSNSRANAKGSSVRDAIA STETEFRDVSLQRNRLPRKSEDVGKKVTAGSDSDCSGRQGKNLSRQSSITDQELNLQARVTRPG KGNQDRHGELQMKANELEKLFAEHKLTSSRRGKPTDVQVESTPMVSEVKPTMVLHETIHTKQVV KESITVNDFDAGELLKMVNNQEFNISTPQKLGILSLEESRGKFYEHYMQKRDAKLKEGWKLQRE EKEAMLKAMHDSLERSKAELLTKFSRSADVPDSTYVSHCSQKIPPSRSARKNKDQRSMHKVHVT LPAAS*(+) MSGRRWQSDMNFVHASLIFIFSC*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b |