Detail information of Zm00001d047426_circ_g.2


General Information
CircRNA Name Zm00001d047426_circ_g.2
ID in PlantcircBase zma_circ_003009
Alias circ1897
Organism Zea mays
Position chr9: 129708896-129710504  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d047426
Parent gene annotation Peptidyl-prolyl cis-trans isomerase PASTICCINO1
Parent gene strand -
Alternative splicing NA
Support reads 4
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d047426_T011:5
Zm00001d047426_T009:4
Zm00001d047426_T004:5
Zm00001d047426_T005:4
Zm00001d047426_T001:5
Zm00001d047426_T002:5
Zm00001d047426_T007:5
Zm00001d047426_T010:4
Zm00001d047426_T012:4
Zm00001d047426_T003:5
Zm00001d047426_T008:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTGTATCATAAAAAACTGACTTTGGTTCATCAAGGAGCATGCCCTTATAATGCACTCTTAATA
GGCTATCATGAAGAGGGCAGTCCATTGGAAATTCACccttatcatatttcgcctttgcaagttc
gaattttccttctttaaacagtctgttaccctgagaaaggcctccagctcagaactagatgtta
atcaactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTATCATATTTCGCCTTTGCAAGTTCGAATTTTCCTTCTTTAAACAGTCTGTTACCCTGAGA
AAGGCCTCCAGCTCAGAACTAGATGTTAATCAACTCAAAATAACAAACCAGTCAATGCACAAGG
AGAAGTATTTGACAGAAGATACACAATCAACATGTGCCATGTAACTAAGTACTGGTTGAAACAC
AGGACAGAAACCACCAACGAATTCAGAATCAGCTGACAGACTATGCTTCAATGCTTTCACATAT
TCACTACTGACATCTTAAACAAAATCGACCATCTTCAGAAACATGGTTGTATTTCTATCAAGCA
CTCAAAAGGCAGTTAACAGTTTGCTCAAATGAGAACAAAACAAAACGAAGTTATATAATTCATA
TGGACATTTTGAAGTATAAACATTTCAGCAAAAATACACTTATGATAAGCTAACTGGGATACAG
ATTTGCACAAGTTGAGCAAAAATGAATTTCAGTCAGTATACCGTGTTCTTTATTTTGTCCGCCT
CATCCATGATTTCTTCAAAAGTTAAGCCAGTCCAATCCTATAGTATAAACAGATAGTCGTCAGA
AGAAAAAAAAAAGAATCAACAGCTAAAACTATAGGAGAAGCAAAATAGAGTGGGAAAATACAAA
CATTAGGTATAAATGCATATGTTTCCTAGGAAAAGTATAGGTCAGTGTACCAGGCTATGAAATG
CTTCCAACAAAAAAAGAAACATTAAGGGCTGATTTGGTGACCCGGGATCCCAGGAGTATTGGAG
GGGATTGAGGGGGAAATTAGTTTATTTCCTCCTCAATCCCCTCCAATCCTCTCGTGATCCCCTT
GTCACCAAATCAACCCTAAAAGTAGGGGGAAAGGGAAAGGCATCTATTCTGTGTCTTTGTTGTC
TATTCCAAGTAGCACTAGGCCACTAGCTATACATTCCTTCGCTATTTAGCACAGTAAACGGATA
CATGTAACAGAAGGGGCAAAACCATCACTAATCAAAATGGGGTGTGTATCAAGAACTGCAAAAC
TCAGCAAAGATGGAAAAACTATTGATCAATGACAAACATTGCACAGGAGCAGAATGCAGAGTAA
CCATTGCTATCATCTGAAAGTGAAATAGGTCTGTTACCTTGGGCATTTCGAATCCAAGTAGTTC
AATTTCCCACTGAACATGAGCTCCTTCAGGAACATTTGCTGGCCTGTTGCAACCACAATATATT
ATTCTGAAGGCCCCATTACAATAAGGGACTCTGAAATAATGTTTGGCACGACCTTGGGAACTTA
TCATATGCAAAATCTGGTGGGCAGGTGACAATAGATTTTTCACCAGGAAGCATTAGCCGAACAC
ACATTTCAAAACCCTCTGGTACCTACAAAATGCTTCGCTGATTTGTAAATTTAACAGCAAAGTT
TCATTCAGTAAAATCATTGTATAATGTGACAGATCAATGTGCTAATATGTACCAAGCCTTCTCC
AGAACAGAATTCCAACGGTTCACCATCATTATCGGCACGTGTATCATAAAAAACTGACTTTGGT
TCATCAAGGAGCATGCCCTTATAATGCACTCTTAATAGGCTATCATGAAGAGGGCAGTCCATTG
GAAATTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.008340455
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b