Detail information of Zm00001d047789_circ_igg.4


General Information
CircRNA Name Zm00001d047789_circ_igg.4
ID in PlantcircBase zma_circ_000490
Alias NA
Organism Zea mays
Position chr9: 141793464-141793566  JBrowse»
Reference genome AGPv4.38
Type   igg-circRNA
Identification method SMALT, Segemehl
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d047789_circ_igg.1 Zm00001d047789_circ_igg.2 Zm00001d047789_circ_igg.3
Support reads 2
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCTGCTCCCCGGGCCGCGCCGCGCCGCGCCTGAAGCCGGTGGCCTCCTCctctccccggcct
cgcacccatggccacggctttgatggttgcagccaccac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTCCCCGGCCTCGCACCCATGGCCACGGCTTTGATGGTTGCAGCCACCACCTCCTGCTCCCC
GGGCCGCGCCGCGCCGCGCCTGAAGCCGGTGGCCTCCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.787217638
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015