Detail information of BGIOSGA011089_circ_g.4


General Information
CircRNA Name BGIOSGA011089_circ_g.4
ID in PlantcircBase osi_circ_004692
Alias 3:8732346|8732940
Organism Oryza sativa ssp. indica
Position chr3: 8732346-8732940  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA011089
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA011089_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA011089-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCGTACTCCATCAGCATTTGCTAAGATCTTGATACCATTTTCATGGGTAGAAACAGCCAGCAG
AGTACCTTCCTTGTTGAATCGGACCCGTGGACTTGCcttgcttgtcctcatattatctgttaat
ttcaatgatctgcactgacttgactcggttatctccataagtttccagacttttgatttatcca
atggctca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGCTTGTCCTCATATTATCTGTTAATTTCAATGATCTGCACTGACTTGACTCGGTTATCTCC
ATAAGTTTCCAGACTTTTGATTTATCCAATGGCTCATCAGCTATTCTAGGCTTTACATCAACCA
AGCTTCGGCTATCCCCATTCTGTAGAATTTTTCCAAGAATGTACAAGTTAGTTGGGTCACTATA
GAAGGTTTTCTGATAGAAAGAGAAAGATCAATAGAAAAGGAATTGTGAATATGGTCAAACCAGT
GCAGTTATTGCCGGTGGAGCAGCATTTCCTGAACTAGTCCCGGCAGCAGCAGCTGACGCCGCCG
CAGCAGCAGCAGCAGTCAATGGATTCATTAGGGGCTGCACCAAGATGGATCTATTGGGTCAAGC
TTGCAAAAATATTTAGTTGTAATTTTAAATGGTCACAAGAACTTACCTTTGTTACAGTCTCAGA
CGCACTCCGAGAAGCATCAAATGAACGATTTTCCAATGTGCGCAGCAACCGTACTCCATCAGCA
TTTGCTAAGATCTTGATACCATTTTCATGGGTAGAAACAGCCAGCAGAGTACCTTCCTTGTTGA
ATCGGACCCGTGGACTTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 8732695-8732348(-)
8732885-8732369(+)
Potential amino acid sequence MNPLTAAAAAAASAAAAGTSSGNAAPPAITALKTFYSDPTNLYILGKILQNGDSRSLVDVKPRI
ADEPLDKSKVWKLMEITESSQCRSLKLTDNMRTSKASPRVRFNKEGTLLAVSTHENGIKILANA
DGVRLLRTLENRSFDASRSASETVTKPLMNPLTAAAAAAASAAAAGTSSGNAAPPAITALKTFY
SDPTNLYILGKILQNGDSRSLVDVKPRIADEPLDKSKVWKLMEITESSQCRSLKLTDNMRTSKA
SPRVRFNKEGTLLAVSTHENGIKILANADGVRLLRTLENRSFDASRSASETVTKPLMNPLTAAA
AAAASAAAAGTSSGNAAPPAITALKTFYSDPTNLYILGKILQNGDSRSLVDVKPRIADEPLDKS
KVWKLMEITESSQCRSLKLTDNMRTSKASPRVRFNKEGTLLAVSTHENGIKILANADGVRLLRT
LENRSFDASRSASETVTKPLMNPLTAAAAAAASAAAAGTSSGNAAPPAITALKTFYSDPTNLYI
LGKILQNGDSRSLVDVKPRIADEPLDKSKVWKLMEITESSQCRSLKLTDNMRTSK(-)
MGRNSQQSTFLVESDPWTCLACPHIIC*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021