Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA011089_circ_g.4 |
ID in PlantcircBase | osi_circ_004692 |
Alias | 3:8732346|8732940 |
Organism | Oryza sativa ssp. indica |
Position | chr3: 8732346-8732940 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA011089 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA011089_circ_g.5 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA011089-TA:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8732695-8732348(-) 8732885-8732369(+) |
Potential amino acid sequence |
MNPLTAAAAAAASAAAAGTSSGNAAPPAITALKTFYSDPTNLYILGKILQNGDSRSLVDVKPRI ADEPLDKSKVWKLMEITESSQCRSLKLTDNMRTSKASPRVRFNKEGTLLAVSTHENGIKILANA DGVRLLRTLENRSFDASRSASETVTKPLMNPLTAAAAAAASAAAAGTSSGNAAPPAITALKTFY SDPTNLYILGKILQNGDSRSLVDVKPRIADEPLDKSKVWKLMEITESSQCRSLKLTDNMRTSKA SPRVRFNKEGTLLAVSTHENGIKILANADGVRLLRTLENRSFDASRSASETVTKPLMNPLTAAA AAAASAAAAGTSSGNAAPPAITALKTFYSDPTNLYILGKILQNGDSRSLVDVKPRIADEPLDKS KVWKLMEITESSQCRSLKLTDNMRTSKASPRVRFNKEGTLLAVSTHENGIKILANADGVRLLRT LENRSFDASRSASETVTKPLMNPLTAAAAAAASAAAAGTSSGNAAPPAITALKTFYSDPTNLYI LGKILQNGDSRSLVDVKPRIADEPLDKSKVWKLMEITESSQCRSLKLTDNMRTSK(-) MGRNSQQSTFLVESDPWTCLACPHIIC*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |