Plant Circular RNA Database

Detail information of orai.007G033500_circ_g.1

			
						 General Information
					
						CircRNA Name
						orai.007G033500_circ_g.1
					
						ID in PlantcircBase
						gra_circ_000695
					
						Alias
						Chr07:2286620|2290515
					
						Organism
						
							Gossypium raimondii						
					
						Position
						
							chrChr07: 2286620-2290515  JBrowse»						
					
						Reference genome
						
							Graimondii_221						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Gorai.007G033500						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							orai.007G033500_circ_g.2 						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Gorai.007G033500.1:12
Gorai.007G033500.2:12
Gorai.007G033500.3:12
Gorai.007G033500.5:11
Gorai.007G033500.4:11

General Information
CircRNA Name	orai.007G033500_circ_g.1
ID in PlantcircBase	gra_circ_000695
Alias	Chr07:2286620\|2290515
Organism	Gossypium raimondii
Position	chrChr07: 2286620-2290515 JBrowse»
Reference genome	Graimondii_221
Type	u-circRNA
Identification method	CIRI
Parent gene	Gorai.007G033500
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	orai.007G033500_circ_g.2
Support reads	2
Tissues	leaf
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Gorai.007G033500.1:12 Gorai.007G033500.2:12 Gorai.007G033500.3:12 Gorai.007G033500.5:11 Gorai.007G033500.4:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATGTATATACACAAGCTCTATACAAGTCTGTGACAGAGCAATACAATGTCCTCAAATCTGCCA
TACATGGAAAACAAGGGTTAGAGGCATCCACTGCAGcgagtgaaactgtttggatctacttcta
aagcaacgaccaggagtttcttcttgacagctagggcaatggctgagctcgttaaagataagga
atccggtg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CGAGTGAAACTGTTTGGATCTACTTCTAAAGCAACGACCAGGAGTTTCTTCTTGACAGCTAGGG
CAATGGCTGAGCTCGTTAAAGATAAGGAATCCGGTGTCGCCGCTGCTGAGGGCGGCAAGATGGA
CATTGAGCATTCCCGTACCTTCCTTGAAGCTCGCTCTGAGGAAGGTCTGCTTTCTTTTTAGCTC
TCTTCCCCTTTTGTGTTTTTAAAATAATGCTTTTCTATTTGTTTAAGCAAATGAAGTTTCCAAT
ATTTTAAAGAATACAGCATGATTTATTTATTTTATTCTTGTGTATTTCCGAAGAATGGAAACAT
AATAAATATATATTATGAGGTTTGAAAGGGAATTAGTTATAAAAACTTGTGAACGTAAAATTTG
TTCTATTTTGAGTTGTTCAAAGATTACGTGATGACTGACCTGTTTTTTGGAGTATAGAAGAATG
TATCAAATTCTAAATTGCTTGCATCAAAAACAGCCTTTAAGAAAAGGTCCATTTTGTTTGTTTT
TTTTTTTTTTGCTCACTCGAATGGATTAAGTTCATGCAGCTGTAATATAAATCTTTTTAATGTG
TTTCCAAGAAGCTTGGAAGTAAAACAATTTGATGCAGAGATTATGTAAAGATTAACGAAAGTAA
TAGCTACACTCGAAAGCGATTCTTAGCTTCATGCAAGAATTTGCTTCGTAGGAGTCATTATTGA
TTGAAGAATTATATGAAAGGATGTTTAGTTATGACTAAGATGGTTGAAAGTAAAATTCGTTGGA
CTACAAGCTCTGTTATTGATAATAGCTTTTTATTTATTCAATGACATACTCAAGTATTATAAGA
AGCTCTTTTAGCCAAATTAACTTTAACTACATTTATTTATGGTTCCAAAATTGAACTAGAGGGT
TGGTTTTATTCTCTCATACTGCTTATTTGTCTACAGAACTCCTATCTGGAATTAAGAAGGAAGT
AGAAGCACGAAGGTTACCTCCAAATGTTGCAGCAGGAATGGAAGAATTCTATCGGAATTATAAA
AATGCTGTAAACTGCTAAACTGGAACTCTTACTTCAGTTCACATTAATGTATGCTCTACTCTGC
ATGTAATATGTTGGTCTAGAAAATGTTAGCAGATATACCATCATATGATAGCTTTGTGCTTTTA
GAACAAATGCACTATTTATACTGGCTTAAGATACACTGTGTTATGAGAACAGGTACGTGAACTT
CATAATGTGATATTAACTTCTTTACAAATTCTTCATTGCACTTTGAAAATCTTGGTGGAAGTGT
ATCCAGTCAAACTACATGTTTTCAGTAGTATATCCCTTAAATGATTGAAATATTTGGGCTAACA
TTTTGACTCAATGCTTGACTTTTACCTGTATATCTGAAACTTAAAAGAGAACCCATTGTTTTTT
TCTTTTAGGTTTTCCAAAGTGGAGATCCTGCTGCTGCTGAAACTGTGTTGTCGAACATGGCTGT
AGCACTTGACCTGATGCTTTTGGATGTAGAGGTAATTGTTCTATGATGCTCTTTCAAGATGACT
CTGCAGTTTGTAACATATATGAACTTCCTTTCTCAGATACTGCATACAAATCATAAGTTTTTAT
GAACTTCTACATGAAATATGACGGTAGCTTTTCAGGATCCTTTTGTCTTTCAACCCTACCACAA
AGCTTTACGGGAGCCATTTGACTACTACATGTTCGGCCAAAATTATATTCGGCCTTTGATTGAT
TTCAGGTAAGTGGCCGACTTCCATACTGTCCGCTAATTGTGAAGGAATATATAGTTTCTCATTG
CTAGTAAGTCCTTCATTATGTAAAATAATATTGTTCATATTCTGATCACACAAGGATGCATTTG
TTACCTTTCATAACATTCATCTATTATGTTCGTTGCAGAAATTCATACGTTGGTAATCTTTCTC
TTTTCTATGAAATAGAGGAGAAGCTTAAGCAGGTGATAACGCTCAGTTTTCCCTCATAGTTTCT
TCTGCAATTACTTCTGGACTTATATCTTGCTGTTTTATGGGTCTTAATTGCAATTTCTTTTGGC
ACAAGTAAAAGTGGTGATAGGAGTTTTTAATATGCAGCTGGGACTTGGAAAGTGTGTATTACTA
CTAGCTATATATTTTCCATTTTAGCTAACCTTTTTGGGTTTAACTGTTAAATTGCTTGCAGGGT
CACAATGTTGTACTTTTTTCAAACCATCAAACTGAAGCTGACCCAGCCGTCATTGCACTGTTGC
TTGAGAAAACAAATCCACATATTGCCGAGAACCTGGTGATTCCCCCATAATTTCCATTCCGAGC
ATTCCGTAGTAGTCGTTATCGTTGTGTTCAATCATAATTTCTGTTTATGCCGCAGATCTATGTT
GCAGGGGATAGAGTCATAACAGATCCTCTTTGCAAGCCTTTCAGCATGGGAAGGTACTCAAATA
GTTACTGAGTTTTCACTTGATTCTGTCAAGATATGCTAAAGGACCACTAACAAAAGAAAAAGTT
GTACCAAATTCATTTTAGAAACCTTATATGCGTGTACTCCAAAAAGCACATGTATGATGTTCCT
GAGCTTGCTGATATGAAAAGAAAAGCCAACATACGAAGTTTAAAAGAGATGGCTTTGCTGCTAA
GGTACCTTAATGCCATAGTAATATTAACATCCTTGAATCTACGCTCTGATTTTTACAACAAATA
TGTAGCCTAAGACCAAAAACTTCGTATCATTATAGGACTGGCTCGAAATTAGTATGGATTGCAC
CAAGTGGCGGCCGGGACCGTCCAGATCCTGTTACAGGAGAATGGAATCCAGTAAGTGAAAAATG
GGTAAAAGCTGCTTTCATTATCAGCTTGCTCCATTTATAGACATACTAATATAAGGATGAATCA
GGCACCCTTTGATTCTTCATCAGTGGACAATATGAGAAGGCTGATAGAAAGTTCAGGCGCTCCA
GGGCATATGTATCCCTTGGCTCTATTGTGCTATGACATTATGCCCCCTCCATCCAAGGTGTGTA
TTTTTGCTTTGCCGGTTTTGTTCATAATATTTATGTTTTCTCTTGTGATTCAATGGATTTCTTT
TTAAAGGTGGAAAAAGAAATTGGAGAAAGAAGAATCATAAGCTTTCATGGGGCTGGATTATCAG
TAGCTCCAGAAGTTGCTGCTAATTGTGAAAAGTCTGAAGAGGTTGGTTGCATTGGGTTGTGTTA
CGTTATGTTATACATATAATTTATAGAAGTTGTCATATGGTATTTGATATTGAGAAAATTTGCC
CTCTCAAAAGAAGCTGAACAAATTAGTCCTTGTTAAATTTAAAAGTGAGCAACTAAAGATAATT
AATATTTTTGTTCACTTTTTCCGTTAATTTATCTTACTAATAAAAAAATTTGCCTTAAATATTT
ATATATTTTGTCAATTTGATGCTGATTTTAAAATTTTCAACAGTTCTTTTTAGAAATCTAAAAA
CAGTTCGTACTGAATATTTTAGAACCAGGACTAAATTGACAAAATTTGTAAAGATTGATAGTTA
AATTTGTTAGTATACCAACCAAAATTAGGATACATTGACGGAAAAAATAAATGTTCTTATTAAT
TGTTCTTAGTTTCTTACACAATGACTAAATTGTATTGATTTTTTTTTTTTGAAAAACCAATTTA
CTTAATATCGAAATTGAGAGGTACTGGAAATATTTTTTACGAATGCATCTTGTGTGTGTTACAC
TTATTGCTTGAAAACAGCATCTGTGATTGCGGGCTGAGAGTTGGCTTTTCCTTTTCCTTTTCCT
TTTGGGATGAGCAGGTTAAGGATGTATATACACAAGCTCTATACAAGTCTGTGACAGAGCAATA
CAATGTCCTCAAATCTGCCATACATGGAAAACAAGGGTTAGAGGCATCCACTGCAG
						
					

			
		

Sequences
Splice junction sequence	GATGTATATACACAAGCTCTATACAAGTCTGTGACAGAGCAATACAATGTCCTCAAATCTGCCA TACATGGAAAACAAGGGTTAGAGGCATCCACTGCAGcgagtgaaactgtttggatctacttcta aagcaacgaccaggagtttcttcttgacagctagggcaatggctgagctcgttaaagataagga atccggtg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CGAGTGAAACTGTTTGGATCTACTTCTAAAGCAACGACCAGGAGTTTCTTCTTGACAGCTAGGG CAATGGCTGAGCTCGTTAAAGATAAGGAATCCGGTGTCGCCGCTGCTGAGGGCGGCAAGATGGA CATTGAGCATTCCCGTACCTTCCTTGAAGCTCGCTCTGAGGAAGGTCTGCTTTCTTTTTAGCTC TCTTCCCCTTTTGTGTTTTTAAAATAATGCTTTTCTATTTGTTTAAGCAAATGAAGTTTCCAAT ATTTTAAAGAATACAGCATGATTTATTTATTTTATTCTTGTGTATTTCCGAAGAATGGAAACAT AATAAATATATATTATGAGGTTTGAAAGGGAATTAGTTATAAAAACTTGTGAACGTAAAATTTG TTCTATTTTGAGTTGTTCAAAGATTACGTGATGACTGACCTGTTTTTTGGAGTATAGAAGAATG TATCAAATTCTAAATTGCTTGCATCAAAAACAGCCTTTAAGAAAAGGTCCATTTTGTTTGTTTT TTTTTTTTTTGCTCACTCGAATGGATTAAGTTCATGCAGCTGTAATATAAATCTTTTTAATGTG TTTCCAAGAAGCTTGGAAGTAAAACAATTTGATGCAGAGATTATGTAAAGATTAACGAAAGTAA TAGCTACACTCGAAAGCGATTCTTAGCTTCATGCAAGAATTTGCTTCGTAGGAGTCATTATTGA TTGAAGAATTATATGAAAGGATGTTTAGTTATGACTAAGATGGTTGAAAGTAAAATTCGTTGGA CTACAAGCTCTGTTATTGATAATAGCTTTTTATTTATTCAATGACATACTCAAGTATTATAAGA AGCTCTTTTAGCCAAATTAACTTTAACTACATTTATTTATGGTTCCAAAATTGAACTAGAGGGT TGGTTTTATTCTCTCATACTGCTTATTTGTCTACAGAACTCCTATCTGGAATTAAGAAGGAAGT AGAAGCACGAAGGTTACCTCCAAATGTTGCAGCAGGAATGGAAGAATTCTATCGGAATTATAAA AATGCTGTAAACTGCTAAACTGGAACTCTTACTTCAGTTCACATTAATGTATGCTCTACTCTGC ATGTAATATGTTGGTCTAGAAAATGTTAGCAGATATACCATCATATGATAGCTTTGTGCTTTTA GAACAAATGCACTATTTATACTGGCTTAAGATACACTGTGTTATGAGAACAGGTACGTGAACTT CATAATGTGATATTAACTTCTTTACAAATTCTTCATTGCACTTTGAAAATCTTGGTGGAAGTGT ATCCAGTCAAACTACATGTTTTCAGTAGTATATCCCTTAAATGATTGAAATATTTGGGCTAACA TTTTGACTCAATGCTTGACTTTTACCTGTATATCTGAAACTTAAAAGAGAACCCATTGTTTTTT TCTTTTAGGTTTTCCAAAGTGGAGATCCTGCTGCTGCTGAAACTGTGTTGTCGAACATGGCTGT AGCACTTGACCTGATGCTTTTGGATGTAGAGGTAATTGTTCTATGATGCTCTTTCAAGATGACT CTGCAGTTTGTAACATATATGAACTTCCTTTCTCAGATACTGCATACAAATCATAAGTTTTTAT GAACTTCTACATGAAATATGACGGTAGCTTTTCAGGATCCTTTTGTCTTTCAACCCTACCACAA AGCTTTACGGGAGCCATTTGACTACTACATGTTCGGCCAAAATTATATTCGGCCTTTGATTGAT TTCAGGTAAGTGGCCGACTTCCATACTGTCCGCTAATTGTGAAGGAATATATAGTTTCTCATTG CTAGTAAGTCCTTCATTATGTAAAATAATATTGTTCATATTCTGATCACACAAGGATGCATTTG TTACCTTTCATAACATTCATCTATTATGTTCGTTGCAGAAATTCATACGTTGGTAATCTTTCTC TTTTCTATGAAATAGAGGAGAAGCTTAAGCAGGTGATAACGCTCAGTTTTCCCTCATAGTTTCT TCTGCAATTACTTCTGGACTTATATCTTGCTGTTTTATGGGTCTTAATTGCAATTTCTTTTGGC ACAAGTAAAAGTGGTGATAGGAGTTTTTAATATGCAGCTGGGACTTGGAAAGTGTGTATTACTA CTAGCTATATATTTTCCATTTTAGCTAACCTTTTTGGGTTTAACTGTTAAATTGCTTGCAGGGT CACAATGTTGTACTTTTTTCAAACCATCAAACTGAAGCTGACCCAGCCGTCATTGCACTGTTGC TTGAGAAAACAAATCCACATATTGCCGAGAACCTGGTGATTCCCCCATAATTTCCATTCCGAGC ATTCCGTAGTAGTCGTTATCGTTGTGTTCAATCATAATTTCTGTTTATGCCGCAGATCTATGTT GCAGGGGATAGAGTCATAACAGATCCTCTTTGCAAGCCTTTCAGCATGGGAAGGTACTCAAATA GTTACTGAGTTTTCACTTGATTCTGTCAAGATATGCTAAAGGACCACTAACAAAAGAAAAAGTT GTACCAAATTCATTTTAGAAACCTTATATGCGTGTACTCCAAAAAGCACATGTATGATGTTCCT GAGCTTGCTGATATGAAAAGAAAAGCCAACATACGAAGTTTAAAAGAGATGGCTTTGCTGCTAA GGTACCTTAATGCCATAGTAATATTAACATCCTTGAATCTACGCTCTGATTTTTACAACAAATA TGTAGCCTAAGACCAAAAACTTCGTATCATTATAGGACTGGCTCGAAATTAGTATGGATTGCAC CAAGTGGCGGCCGGGACCGTCCAGATCCTGTTACAGGAGAATGGAATCCAGTAAGTGAAAAATG GGTAAAAGCTGCTTTCATTATCAGCTTGCTCCATTTATAGACATACTAATATAAGGATGAATCA GGCACCCTTTGATTCTTCATCAGTGGACAATATGAGAAGGCTGATAGAAAGTTCAGGCGCTCCA GGGCATATGTATCCCTTGGCTCTATTGTGCTATGACATTATGCCCCCTCCATCCAAGGTGTGTA TTTTTGCTTTGCCGGTTTTGTTCATAATATTTATGTTTTCTCTTGTGATTCAATGGATTTCTTT TTAAAGGTGGAAAAAGAAATTGGAGAAAGAAGAATCATAAGCTTTCATGGGGCTGGATTATCAG TAGCTCCAGAAGTTGCTGCTAATTGTGAAAAGTCTGAAGAGGTTGGTTGCATTGGGTTGTGTTA CGTTATGTTATACATATAATTTATAGAAGTTGTCATATGGTATTTGATATTGAGAAAATTTGCC CTCTCAAAAGAAGCTGAACAAATTAGTCCTTGTTAAATTTAAAAGTGAGCAACTAAAGATAATT AATATTTTTGTTCACTTTTTCCGTTAATTTATCTTACTAATAAAAAAATTTGCCTTAAATATTT ATATATTTTGTCAATTTGATGCTGATTTTAAAATTTTCAACAGTTCTTTTTAGAAATCTAAAAA CAGTTCGTACTGAATATTTTAGAACCAGGACTAAATTGACAAAATTTGTAAAGATTGATAGTTA AATTTGTTAGTATACCAACCAAAATTAGGATACATTGACGGAAAAAATAAATGTTCTTATTAAT TGTTCTTAGTTTCTTACACAATGACTAAATTGTATTGATTTTTTTTTTTTGAAAAACCAATTTA CTTAATATCGAAATTGAGAGGTACTGGAAATATTTTTTACGAATGCATCTTGTGTGTGTTACAC TTATTGCTTGAAAACAGCATCTGTGATTGCGGGCTGAGAGTTGGCTTTTCCTTTTCCTTTTCCT TTTGGGATGAGCAGGTTAAGGATGTATATACACAAGCTCTATACAAGTCTGTGACAGAGCAATA CAATGTCCTCAAATCTGCCATACATGGAAAACAAGGGTTAGAGGCATCCACTGCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.097341536

Conservation Information
Conserved circRNAs	NA
PMCS	0.097341536

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017b

circRNA

Detail information of orai.007G033500_circ_g.1

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