Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d035862_circ_g.1 |
ID in PlantcircBase | zma_circ_008925 |
Alias | zma_circ_0002482 |
Organism | Zea mays |
Position | chr6: 57397117-57397745 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d035862 |
Parent gene annotation |
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger d omain |
Parent gene strand | + |
Alternative splicing | Zm00001d035862_circ_ag.1 Zm00001d035862_circ_ag.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d035862_T002:4 Zm00001d035862_T003:4 Zm00001d035862_T005:4 Zm00001d035862_T001:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.130369065 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
57397172-57397742(+) |
Potential amino acid sequence |
MVNGRGPKEGMPGQDYSGMYCALLTVGSTVVSAALLRVMGGDVAELPLVATSQDVQGLGYFQAL FSCIERVLVSLKIKHFVLPAAHEAEGIWMNKFGFSRISPEEQSFDPIREALTGRDLIPEMVNGR GPKEGMPGQDYSGMYCALLTVGSTVVSAALLRVMGGDVAELPLVATSQDVQGLGYFQALFSCIE RVLVSLKIKHFVLPAAHEAEGIWMNKFGFSRISPEEQSFDPIREALTGRDLIPEMVNGRGPKEG MPGQDYSGMYCALLTVGSTVVSAALLRVMGGDVAELPLVATSQDVQGLGYFQALFSCIERVLVS LKIKHFVLPAAHEAEGIWMNKFGFSRISPEEQSFDPIREALTGRDLIPEMVNGRGPKEGMPGQD YSGMYCALLTVGSTVVSAALLRVMGGDVAELPLVATSQDVQGLGYFQALFSCIERVLVSLKIKH FVLPAAHEAEGIWMNKFGFSRISPEE(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |