Detail information of BGIOSGA014586_circ_g.1


General Information
CircRNA Name BGIOSGA014586_circ_g.1
ID in PlantcircBase osi_circ_014630
Alias Chr04:28276683_28277682(MH63RS2), Chr04:28276683_28277682(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26495361-26496360  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA014586
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA014586-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTTGGCAGTAACTAGCATAGATGGCATTGTTGACAACCCCATATTGGTCGAGTTCATAATCT
CGTACCTTCATCTCCACCTCGAAAAACTGATCCAACctgctactgccttcagaagtgaagaact
gcagcttggacaggaactctggagatatacgggtggggcggtagtctttgttcaaacaaaccgc
tgttgcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTACTGCCTTCAGAAGTGAAGAACTGCAGCTTGGACAGGAACTCTGGAGATATACGGGTGG
GGCGGTAGTCTTTGTTCAAACAAACCGCTGTTGCCTTCGCTTCCAAAATGAGCTGCTAGGAGAA
GAATATGGAAAAGTGTGATCTATGCAAAGAGCAGTTGCAAAGGAAATCCTACGACCAATTTGTG
ACTGAAATAACATATAGATTTCATAAGTTGGTACTATGTTGCGAAAAATGCTAGTACGTTGCTA
CTGATGGCATTGTGCTATTGCTGCCAAGATTTGTTACCAACATGATTGAGAATTTGAAACGTAC
TGTGCTTTTAATTCCTTTTCCTATTCTAAAATCTGCAATTATTTGTGCTGCATACCTCACGATT
AGGCAGCTTTTCAATGAAGTGCTCGAATATCATCCTTATACCTTTTGTGCTCGCAAGCCTGACC
TTAACGACGAACTTGTCACCACTCTGACAAGTCAAAGAAACAAAGGGAGAAGTTAGACCCAAAT
GAGCCTATTATCAATATTTAGAGTTTGATCTGTTATTAGTTTCATAGTATCACATCAACATTTT
TCAGTTCTGGTTTTTGCACAACTTGGGAAACAAGGATGTTACTCTCAAAGGCGCGTAGTACTTG
AGGTGCAGTTCAGAGAGGGCCAGCGACTCACCGCTGCGTGCTACTGCATCTGCACTTATGCCTA
CACATTCAAGTAGCTCATGACGACCTGCTCAATTTTTTTAAAAAATAAATGAATCCTTAATTTT
GTCAGAACCAACCATGGTTATCATATTATTTTAATTAAATTCTAAACATGCTATAGGAATCATA
TTAACTGACCTAATTAATATAAATGAGATGTTCTTTTAGTTTGTTTCATTGGTAGAACAGAACT
CACCATGTTGGCAGTAACTAGCATAGATGGCATTGTTGACAACCCCATATTGGTCGAGTTCATA
ATCTCGTACCTTCATCTCCACCTCGAAAAACTGATCCAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021