Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G16060_circ_g.2 |
ID in PlantcircBase | ath_circ_002864 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5509594-5510323 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G16060 |
Parent gene annotation |
AP2-like ethylene-responsive transcription factor At1g16060 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G16060.4:3 AT1G16060.7:1 AT1G16060.6:3 AT1G16060.1:4 AT1G16060.2:4 AT1G16060.5:4 AT1G16060.3:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.232084346 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5509938-5510320(+) |
Potential amino acid sequence |
MESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRWEARIGRVFGNKYLYLGTYGAYDEED AAARAYDLAALKYWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVA KHHHNGRWEARIGRVFGNKYLYLGTYGAYDEEDAAARAYDLAALKYWGRDTILNFPLCNYEEDI KEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRWEARIGRVFGNKYLYLGTYGAYDE EDAAARAYDLAALKYWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRG VAKHHHNGRWEARIGRVFGNKYLYLGTY(+) |
Sponge-miRNAs | ath-miR870-5p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |