Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | orai.009G246400_circ_g.1 |
| ID in PlantcircBase | gra_circ_000970 |
| Alias | Chr09:19845174|19849071 |
| Organism | Gossypium raimondii |
| Position | chrChr09: 19845174-19849071 JBrowse» |
| Reference genome | Graimondii_221 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Gorai.009G246400 |
| Parent gene annotation | NA |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | 2/4 |
| Tissues | leaf/ovule |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Gorai.009G246400.1:6 Gorai.009G246400.2:6 Gorai.009G246400.5:6 Gorai.009G246400.4:6 Gorai.009G246400.6:6 Gorai.009G246400.3:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.100879049 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
19845186-19849068(+) 19845224-19848867(-) |
| Potential amino acid sequence |
MPAVYFFLIDVSMNAVQTGATAAACSAINQVISDLPEGTRTQVGIATFDSTIHFYNLKRALQQP LMLIVPDIQDVYTPLETDVIVQLSECRQHLELLLENIPTMFQTSTTAESCFGAAIKAAFLAMKS IGGKLLVFQSVLPSVGIGALSSREAEGRTNISASEKVRDPMPAVYFFLIDVSMNAVQTGATAAA CSAINQVISDLPEGTRTQVGIATFDSTIHFYNLKRALQQPLMLIVPDIQDVYTPLETDVIVQLS ECRQHLELLLENIPTMFQTSTTAESCFGAAIKAAFLAMKSIGGKLLVFQSVLPSVGIGALSSRE AEGRTNISASEKVRDPMPAVYFFLIDVSMNAVQTGATAAACSAINQVISDLPEGTRTQVGIATF DSTIHFYNLKRALQQPLMLIVPDIQDVYTPLETDVIVQLSECRQHLELLLENIPTMFQTSTTAE SCFGAAIKAAFLAMKSIGGKLLVFQSVLPSVGIGALSSREAEGRTNISASEKVRDPMPAVYFFL IDVSMNAVQTGATAAACSAINQVISDLPEGTRTQVGIATFDSTIHFYNLKRALQQPLMLIVPDI QDVYTPLETDVIVQLSECRQHLELLLENIPTMFQTSTTAESCFGAAIKAAFLAMKSIGGKLLVF QSVLPSVGIGALSSREAEGRTNISASEK(+) MDTSIRKKYTAGIGSRTFSLAEMLVLPSASLEDRAPMPTDGKTD*(-) |
| Sponge-miRNAs | gra-miR5741 |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhao et al., 2017b |