Detail information of BGIOSGA015691_circ_g.1


General Information
CircRNA Name BGIOSGA015691_circ_g.1
ID in PlantcircBase osi_circ_014209
Alias Chr04:1219294_1219505(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 1100302-1100510  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ
Parent gene BGIOSGA015691
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCTGGTAGTCAAAAGACATGTTCTTCCATGTGTTACATAGTACCCCAAGTGCATGTATGATGG
TCCTTTATGAGCATCTACAACTAGCATAATGCCCACccaagaattagggcattggaattagtgt
tgcaaaataagtacaagcaccatggataaagatgctatcctccatcattgtgttattttggcct
atgcatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAAGAATTAGGGCATTGGAATTAGTGTTGCAAAATAAGTACAAGCACCATGGATAAAGATGCT
ATCCTCCATCATTGTGTTATTTTGGCCTATGCATACAACAGTGATGTCTGGTAGTCAAAAGACA
TGTTCTTCCATGTGTTACATAGTACCCCAAGTGCATGTATGATGGTCCTTTATGAGCATCTACA
ACTAGCATAATGCCCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021