Detail information of Zm00001d006341_circ_ag.1


General Information
CircRNA Name Zm00001d006341_circ_ag.1
ID in PlantcircBase zma_circ_004006
Alias leafctrl_test_circ_001395
Organism Zea mays
Position chr2: 205066513-205071206  JBrowse»
Reference genome AGPv4.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d006341_circ_ag.2 Zm00001d006341_circ_ag.3 Zm00001d006341_circ_ag.4 Zm00001d006342_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCGGCGGGGAGCCGGCGGCGACTGTGAAATCTATCTTCATATACCCTATCAAGTCCTGCAGGG
GTCTTGCCGTGTCACAGGCGCCCATCACCTCCACTGgggttccggtgggatcggcagtgggtgg
tggtgaacggcaaagggcgagcatacacccagagggtggaacccaagctcgctctggtccaggt
agagttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGTTCCGGTGGGATCGGCAGTGGGTGGTGGTGAACGGCAAAGGGCGAGCATACACCCAGAGGG
TGGAACCCAAGCTCGCTCTGGTCCAGGTAGAGTTGCCGCCGGAGGCCTTCGCCGAGGACTGGCA
GCCCACGCCCTACGACCACCTGGGTATTCCTGGATTCATTTATCTGATTATTCTCTCCGCATCA
TTTTGCTAGCTGTAACACTCTCAGAAACCGACCTCAGGCCCTGGTTGAATGCAGAGCTAATAGT
TAGCTATTAAAATTAACTGGAAACATTCAAATACCACAGCTAATAGTTTAGCTATTAGCTATTT
TTACCTAGAGACATACAAACACCCCTAACTAATAGTCCACCTAACTGTTAACTGCACTCTCAAC
TTTTCAACACTTAAACCTAGCTAAGGGTTCAACTTTTCAACACTTAAACCTAGCTAAGGGGTTT
TTTGAATACACTAGAGGTAATAGTTAGTTTACTACAAAAATTGCTAGTAAAATTAGTTGCTAAC
TACTACCTTCATTTTTTATATTTGACGCCAAATAGTATAAAAATGAACTACAAACAAATAAAAA
AATATGGAGAGAGTATTAGCTAATTTGCTAAAAGTAAAGTTGAATTATTAGTTAGACTGTTTGG
ATGTCTTTATCTAATCTTAGCAGCTAAGTATTAGATCTAGTGCGCTCAAACATGGCCTAAAATT
ATTTATTGATTAGCCAATTAATAGTTAGCTAGCTAATTTTACTAGCAATTTTTTAGTCAACCAC
TAATTATTAGCTCTAGTACATTCAAACGGAGCCTTAAACTGACAGCATTGAAATCCTAACACTA
CAAGCAAACCGACACTAGCGAGTATGTCTCCCACAAAATCTGTGGTGGCTGGTTGGCCATCTCC
TCCATCTTCCTCGCGAACTCCTCCGGACTTGTTTCGTGCTTGAGCATAGCAGCCCATCTTCGTA
GCATCCTAGAAATCTTGATCAGTACCATCTTCAACCCCAACCAAACAGTCCCCTGAAAGCACAA
TTCGTTTCTTAGTTTCCAAATTGACCACAAAACTGCAGAAGAGATTACATTAGTACCACATGTT
TTTTATTAGCCACTCGCAGTCTGGCCACTGATTCAAAATCATTTCCCAACTCCAAACTCAACAT
CCTGGAGACCAATCTCCAGATATTGTTGGCAATACAGCATTGAAAAAATACGTGAGGAATAGAT
TCATGCTCAGTACAGAACAGACAAGAAGGATCATGAACCTCTCTCCTCTTTGCTAGGTAATCTC
TAGTAAGTACCTGTTGTTTGACACTAACCATAAGAAGAGATGCACTCTTGGTGAAAACTGCAAT
TTCCAAATTGAGCTCACAAACAGTGGAAAAATAGCCCTTCAGTTAATCACTGAATACAAAGACT
GCACAGCATAAACCCCATTTGAAGTAAAATTCCACATAATCTGATCATCTTCATCATTAAGTGA
AATATCCTCAATTAGGCTACTCAGCTCCAACTGTACAACCTGAATGGAACCAATTGATGCAAAG
GGAGGGGGGGATCAGAATCTACAGCTACTACTGTCCCTAGCATTTTGTCCTTGTACCAATTCCA
AGTGCTTCTCAGTCTTCATCGGGAATTCATGCTGATAGATCAGCAACTGTTACCATTCATGTGC
TCGAAAAGGTTCTTGCCTGTTACATGCTTGCCAAGACCCAAGAGTTTATTGGCTCATGGACATG
GCAAGCACAGCCTCAGCCTACAGGATGTGCACTTTAGTTTCCATGTTTATGTTACAGAGGACAC
TCCGAAATACACAATGTTTATTCACTCTTCTCAAAATCTTGCAGTTATCAGAGCACCCGGAATG
GACACGCTGAAGATACCTCTAGCAGCGGAACACACCACAATCGATGATGTCTCTGTGTGGGAGT
GGTCTGGCTCTGCGTACGATGAAGGGGCTGAAGTGTCTGAGTGGTTCTCCACTTACTTTGGGAA
GCCAAGTCGACTAGTGCGCTTCAAAGAAGGTTCAGGCATTTACATTTCCCTTGGAATAGGTTTT
GCACGGCTAGATGATCTTCTCTATTGCTTATGGACAACGCTTGCTTTGCTGCATTTTTTACAGC
ATCCGAAACTAGGCCAACTGATCCATATTACGGCCAAGGCCAAGGTTACAAGATCATGTTCACC
GATCGCTTCCCATTTCTGATAGCCTCTCAGGTCACTTCATACTTCTATTCAGTTTTGAGACAAA
TGCCCTGTGTCAATGTTGCCATACACAAAACTAGCACCCTCGTAATGCACATTTAGTTGCACTG
CAGGGTTCATTGGACGCACTAAATGAGATTCTTAAAGAACCTGTACCAATGAACCGCTTCAGAC
CAAAGTGAGCATCACGCTTGTGCGCTTGTAGTTATATTCTGAGTAGATTTTTTTTTTCTTTTGG
TTGGTTTATTCTATTGAGGCTGACAGTTAGCTGCTTGCTAGTTGTGTCTTTATCTTCTTATTAA
GCTGATCCCTTTTGACAGTATTTTAGTGGATGGATGCAACCCATACTCAGAGGACCTGTGGAAA
ACCATAAAGATAAGGAACAATTGGATCTATACCATTAAAAGATCCAAACTTTAGATATATACCA
TGGACCCCACATGTCATTGACTCATGTGGACCCACATGTAAGTGAGATAGTAATGGTATAAATC
TAAAGTGGTGATCTTTTAATGGTATGGATCCAAATTTCCCTTGATTATTTGTGGACTTGAATTG
ACCATCTTAAAAACGAGAAATAATTCCTTGTATGGACAAACTAGATACGAATTATACAATGGTG
TACGTGTTTACTTCAGCAAGCCAATACATATAAGATTATCGTTTGTTTAGTTACTGTGTTGATT
AATTCAGGTGCCAAGCATTAATCAAGAGGATGGAATACCTGGCACTGAACCAAATGAAACTCTA
CAGACATTTCGGTCCGACCAAGTGCTTCGTCCAAGCCACAAAAATAAACGACAGGTATTTGCCT
TATGCAGCCTATCTTCCTCATATTATCTGCTTCGTTTGTTAAGGAATTGTCTGTGGCCTACTGG
CCTTGCAAGTTGCTAAGGTCATCAGGATCACTGGCAATGACAATGGAACACTTTAATCGATTTT
TATAGGTGTACTTTGGGGTGAATTTAGTCTGCAAGGAATCTCTATCAGGAAAGGACGAAGGAAA
GATCATCAAGGTTGGCGATCCAGTTTATGTTGTGCAGGCATTCGATTCTTCTAATGAAGCCCTA
GTCTGATTCAGGGTTAAAAATAGTGACAGTGTGTTCAAAAATCAAAATAAGTGAGTTTGTTATG
CGCACTGGAGAAACAAAAATCAGCGGGCTGTTAAAACTGTTAATGAGACAATAAAACTCCTGCT
GCTGGACAGTAATTATGAGTTAGATGTACCTTCATCAGGGGTTTATTTACCTCTATGATATTAC
ATAGTATACCTTGTACATCAGAATGATACAAAACAATAAGTCCCAAAAAGGAAGGTGAGTTAGA
CGACTTTGTCTAGATAGGATGGAATGGATGGCTGATGGAGTCTCTTGTGCCCTATACAAAATCA
GTGACCCACTGCAAGTTCCTTCAGTTACATCAGAAATTCAGAATAGCATGTGTACCTCTAGTTT
CAAGGATCTTCCAAAGCCATTCAGGGACTATATCAAAACCATATCAGTAACTTAGTGGTTATTA
GTCAAGGCTTAAAAGCTCAAAGACTCGTAGTATTACATTTTTTTTATATAACAACAATTGATTG
CTAGAATTTAAAGATATCACTTGGTGTGCAATGCAATCGAGGGTGGATCATGCTAAGGCATGTT
CTAAACCTCTAAACTTAATAGTTAGCGGCTAAAATTAGTTGAGAGATTTTAAACGCACTAATTA
TTAGTTATATCTTTTAAATAGCTATTAGTTGTTAGCCGCTTCAATCTAATTAAAACTAGTTAAT
TTATAATTTATTTGACTTTTTTACCTAAGTTTACTAGCTCATCTTATTCAAAAGATTTCATAAT
TGTTATTAATTTTTACTAGGTTATCTTTTAAGATATAATATAATATACTTTAAATGTGGCTTTG
AATTTTTTTTGTTTTTCCCGTAAAAATGAGTAAGACAAGCGTGATAAAAAAAGTTAAATAAATT
ATAAATCAGAATTCATGAATCATTAGCTAACTAATATTTAGCTTTAGAGGTTTAACGGAGGACT
TCATACAATCATACGTCGTCGTTGTAGAAAAATGCTACACGTTTTACGTTTTTATCGTGTAGCC
GAGCAAAACAAATACTAAATGCCGCCACCGCCCACCGCCGTATCATCCTGCTGGCGCGGCACAA
GACGCCACCGAGCCAAGAATTTGCATCCTCATCCTGCGGCTGTCAGTGTCAAGCAGCCAGGCTC
AGGGGTAAGGTTTCAGCAATTCAGCTCCCTCGCCTCCGCCGCGGCACCGGCACTACGAGTGCTT
CGCTACCAGCCAGCCAGCACACTCTACGAGTCGCCATCTTCCACTCCACCGAGGCAGCTCCAAG
CCATGGCCATGGAGAAGGCCGCCTCCTTCCTCTCCTCCCTCTTAGGCGGCGGCGGCGGGGAGCC
GGCGGCGACTGTGAAATCTATCTTCATATACCCTATCAAGTCCTGCAGGGGTCTTGCCGTGTCA
CAGGCGCCCATCACCTCCACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.120036575
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018