Detail information of Zm00001d031891_circ_g.2


General Information
CircRNA Name Zm00001d031891_circ_g.2
ID in PlantcircBase zma_circ_003587
Alias tassel_test_circ_001316
Organism Zea mays
Position chr1: 205438953-205439198  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d031891
Parent gene annotation Peptidase M1 family protein
Parent gene strand +
Alternative splicing Zm00001d031891_circ_g.3
Support reads NA
Tissues tassel
Exon boundary   No-No
Splicing signals   GT-AA
Number of exons covered Zm00001d031891_T003:2
Zm00001d031891_T021:2
Zm00001d031891_T022:2
Zm00001d031891_T001:2
Zm00001d031891_T006:2
Zm00001d031891_T014:2
Zm00001d031891_T002:2
Zm00001d031891_T015:2
Zm00001d031891_T012:2
Zm00001d031891_T019:2
Zm00001d031891_T016:2
Zm00001d031891_T020:2
Zm00001d031891_T017:2
Zm00001d031891_T005:2
Zm00001d031891_T010:2
Zm00001d031891_T013:2
Zm00001d031891_T004:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGGACCACAATACTGCAGATAATTTCGTTTTCTATTTAAAGAATTCAATCTAATGATCTGTC
TATTCCCTAGATGGGAAGCTGGCCAAGTTTTGGCACgagtttatgtttaaaaacattcctgaga
ggccagttccttctttgttaaggggatatagtgctcctgtccgtctagattctgatctgagtga
gggtgacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGTTTATGTTTAAAAACATTCCTGAGAGGCCAGTTCCTTCTTTGTTAAGGGGATATAGTGCTC
CTGTCCGTCTAGATTCTGATCTGAGTGAGGGTGACCTATTTTTCTTGCTTGCCAGTGACTCGGA
TGAATTTAACAGGTATGTTCTGGACCACAATACTGCAGATAATTTCGTTTTCTATTTAAAGAAT
TCAATCTAATGATCTGTCTATTCCCTAGATGGGAAGCTGGCCAAGTTTTGGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.416346917
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018