Plant Circular RNA Database

Detail information of AT4G16860_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT4G16860_circ_g.1
					
						ID in PlantcircBase
						ath_circ_031299
					
						Alias
						At_ciR2904, AT4G16860_C1
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 9489372-9490811  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI2
					
						Parent gene
						
							AT4G16860						
					
						Parent gene annotation
						
							Disease resistance protein RPP4
							
						Parent gene strand
						-
					
						Alternative splicing
						
							4_circ_ag.7 4_circ_ag.8 4_circ_ag.2 4_circ_ag.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 4_circ_ag.14 4_circ_ag.15 4_circ_ag.16 4_circ_ag.17 4_circ_ag.18 4_circ_ag.19 4_circ_ag.20 AT4G16890_circ_g.1 4_circ_ag.2 4_circ_ag.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 4_circ_ag.14 AT4G16950_circ_g.1 4_circ_ag.2 AT4G16960_circ_g.1 AT4G16970_circ_g.1 						
					
						Support reads
						3/19/2
					
						Tissues
						leaf/leaf, aerial, inflorescences, whole_plant/seedlings
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT4G16860.1:3
AT4G16860.2:3

General Information
CircRNA Name	AT4G16860_circ_g.1
ID in PlantcircBase	ath_circ_031299
Alias	At_ciR2904, AT4G16860_C1
Organism	Arabidpsis thaliana
Position	chr4: 9489372-9490811 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI2
Parent gene	AT4G16860
Parent gene annotation	Disease resistance protein RPP4
Parent gene strand	-
Alternative splicing	4_circ_ag.7 4_circ_ag.8 4_circ_ag.2 4_circ_ag.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 4_circ_ag.14 4_circ_ag.15 4_circ_ag.16 4_circ_ag.17 4_circ_ag.18 4_circ_ag.19 4_circ_ag.20 AT4G16890_circ_g.1 4_circ_ag.2 4_circ_ag.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 4_circ_ag.14 AT4G16950_circ_g.1 4_circ_ag.2 AT4G16960_circ_g.1 AT4G16970_circ_g.1
Support reads	3/19/2
Tissues	leaf/leaf, aerial, inflorescences, whole_plant/seedlings
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT4G16860.1:3 AT4G16860.2:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TACGCATGCCTTTGAACGATTCTTCGTTTATTACTAATAACGGCCTTGTCGAAAATAATACCGT
GGGTGGCACACGTATTCCAAGAACAGTTTCTGTCCCctggatgccttcccatagcttctcatgc
ttgcagccgctcacatcgagaaaagtgagatattctgggcgaaattcacaaggcatacacctca
taaggcag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1224
Transcript exons: 9489372-9489851,9489968-9490378,9490479-9490811
CTGGATGCCTTCCCATAGCTTCTCATGCTTGCAGCCGCTCACATCGAGAAAAGTGAGATATTCT
GGGCGAAATTCACAAGGCATACACCTCATAAGGCAGTCGAGATAATCTAGTCCAGCAGGGAGAT
TCTTGTTCCAGAAACAATCTTCTACCTCGATCTCATTTCTATCTTGCAGAATTTCAAAGTATGA
ACATCCCATTTTGATTGCTGGGAAATTTCTCAAATTCGGGCATCCAGTGAGATTGAGGTACTCG
AGAGATTCCAAGTTGAGATCGGTTGGAAAACTCTCTAGCTTTTTGCAATCTCTCATATCTAAAT
TGATCAATTTAGTGGCATTCTGAATCGAGGAAGGAAGTGTCACCAAAGATTCGCATCCAAAAAG
ATATAGTCTCTCCAGGTTTATGGCTAAAGAAAGATCTGGAATTTCTTTCAAATATTTGGAACCA
TGCAGATACATCTCCTTGAGGCTTCCAAGTGGCTGAGTTCCATCCCACAGCTTCTCAAGGTCAC
TATTCTCCATTCTGAGTTCAACTAGATACTCAGCCTTAAAATTAGAAGGCAAACGCTTCACTGG
ACAATAATCCCACCATAGCCTTTTGAGTTTACGTGGCAAGTAAATGAGGCCTTGAGTGCCTTCC
ATACTTGACCAATCAACTGATAGATATTCGAGATTACACATGCCTTCTAATGATTTTAAATCTA
TTAATAGCACCCCCGAACAATATAACGTCCTCAGTTTAATGGCATTCTGAATCGAGGAAGGAAG
TGTCACCAAAGATTCGCATTTAGAAAGATTTAATTCCTCGAGGTTTATGGCTAAAGAAAGATCT
GGAATTTCTTTCAAATTGTTGGAACACCCCAAATCCATCTTCTTGAGACTTCCAAGGGGCAGAG
TTCCTTCCCACAGTTTCTCAAGCTTACTATACTTCATTATGAGGTTAACTAGATATTCCGCCTT
AAAAGTAGATGGCAAAGACTTCAATGGACAATAATTCCATTTTAGCAATTTGAGTTTAAGGGGC
AAATAAACGAGGCCCTGAGGTAGATCTATTTTTGACCAAAGACCAATTTCTGACCAAAGACCAA
TTTCTGACCAATGACCAATTTCTAGATATTGGAGATTACGCATGCCTTTGAACGATTCTTCGTT
TATTACTAATAACGGCCTTGTCGAAAATAATACCGTGGGTGGCACACGTATTCCAAGAACAGTT
TCTGTCCC
Transcript length: 479
Transcript exons: 9489372-9489500,9489968-9490123,9490203-9490305,9490721-
9490811
CTGGATGCCTTCCCATAGCTTCTCATGCTTGCAGCCGCTCACATCGAGAAAAGTGAGATATTCT
GGGCGAAATTCACAAGGCATACACCTCATAAGGCAGTCGAGATAATCTAGTCCAGCAGGGAGAT
TCTGAGTTCCATCCCACAGCTTCTCAAGGTCACTATTCTCCATTCTGAGTTCAACTAGATACTC
AGCCTTAAAATTAGAAGGCAAACGCTTCACTGGACAATAATCCCACCATAGCCTTTTGAGTTTA
CGTGGCAAGTAAATGAGGCCTTGAGTGCCCCCGAACAATATAACGTCCTCAGTTTAATGGCATT
CTGAATCGAGGAAGGAAGTGTCACCAAAGATTCGCATTTAGAAAGATTTAATTCCTCGAGGTTT
ATGGCTTTGAACGATTCTTCGTTTATTACTAATAACGGCCTTGTCGAAAATAATACCGTGGGTG
GCACACGTATTCCAAGAACAGTTTCTGTCCC
Transcript length: 784
Transcript exons: 9489372-9489601,9489968-9490164,9490220-9490379,9490609-
9490709,9490716-9490811
CTGGATGCCTTCCCATAGCTTCTCATGCTTGCAGCCGCTCACATCGAGAAAAGTGAGATATTCT
GGGCGAAATTCACAAGGCATACACCTCATAAGGCAGTCGAGATAATCTAGTCCAGCAGGGAGAT
TCTTGTTCCAGAAACAATCTTCTACCTCGATCTCATTTCTATCTTGCAGAATTTCAAAGTATGA
ACATCCCATTTTGATTGCTGGGAAATTTCTCAAATTCGCTGAGTTCCATCCCACAGCTTCTCAA
GGTCACTATTCTCCATTCTGAGTTCAACTAGATACTCAGCCTTAAAATTAGAAGGCAAACGCTT
CACTGGACAATAATCCCACCATAGCCTTTTGAGTTTACGTGGCAAGTAAATGAGGCCTTGAGTG
CCTTCCATACTTGACCAATCAACTGATAGATATTCGAGATTACCCTCAGTTTAATGGCATTCTG
AATCGAGGAAGGAAGTGTCACCAAAGATTCGCATTTAGAAAGATTTAATTCCTCGAGGTTTATG
GCTAAAGAAAGATCTGGAATTTCTTTCAAATTGTTGGAACACCCCAAATCCATCTTCTTGAGAC
TTCCAAGGGGCGGCAAATAAACGAGGCCCTGAGGTAGATCTATTTTTGACCAAAGACCAATTTC
TGACCAAAGACCAATTTCTGACCAATGACCAATTTCTAGATATTGGAGCATGCCTTTGAACGAT
TCTTCGTTTATTACTAATAACGGCCTTGTCGAAAATAATACCGTGGGTGGCACACGTATTCCAA
GAACAGTTTCTGTCCC
						
					

						Genomic sequence
						
							CTGGATGCCTTCCCATAGCTTCTCATGCTTGCAGCCGCTCACATCGAGAAAAGTGAGATATTCT
GGGCGAAATTCACAAGGCATACACCTCATAAGGCAGTCGAGATAATCTAGTCCAGCAGGGAGAT
TCTTGTTCCAGAAACAATCTTCTACCTCGATCTCATTTCTATCTTGCAGAATTTCAAAGTATGA
ACATCCCATTTTGATTGCTGGGAAATTTCTCAAATTCGGGCATCCAGTGAGATTGAGGTACTCG
AGAGATTCCAAGTTGAGATCGGTTGGAAAACTCTCTAGCTTTTTGCAATCTCTCATATCTAAAT
TGATCAATTTAGTGGCATTCTGAATCGAGGAAGGAAGTGTCACCAAAGATTCGCATCCAAAAAG
ATATAGTCTCTCCAGGTTTATGGCTAAAGAAAGATCTGGAATTTCTTTCAAATATTTGGAACCA
TGCAGATACATCTCCTTGAGGCTTCCAAGTGGCTGATAACAAAATAGGGGAAAAGAGAGTACAC
GCGTTAATGAATATTTTAAACAGATTCATTTTTGTTTTTCTAACATATTTATGTTTAGAAATTG
ATCACTAATAGAATTAGTACCTGAGTTCCATCCCACAGCTTCTCAAGGTCACTATTCTCCATTC
TGAGTTCAACTAGATACTCAGCCTTAAAATTAGAAGGCAAACGCTTCACTGGACAATAATCCCA
CCATAGCCTTTTGAGTTTACGTGGCAAGTAAATGAGGCCTTGAGTGCCTTCCATACTTGACCAA
TCAACTGATAGATATTCGAGATTACACATGCCTTCTAATGATTTTAAATCTATTAATAGCACCC
CCGAACAATATAACGTCCTCAGTTTAATGGCATTCTGAATCGAGGAAGGAAGTGTCACCAAAGA
TTCGCATTTAGAAAGATTTAATTCCTCGAGGTTTATGGCTAAAGAAAGATCTGGAATTTCTTTC
AAATTGTTGGAACACCCCAAATCCATCTTCTTGAGACTTCCAAGGGGCTGAAAACAAAATATGG
AAAAAGAGAATACACACGTTCACAAATATACCACAATTTTCTGTTCTAAAAACTGACAACTAAT
AAAAATTTAGAATTCGTACCAGAGTTCCTTCCCACAGTTTCTCAAGCTTACTATACTTCATTAT
GAGGTTAACTAGATATTCCGCCTTAAAAGTAGATGGCAAAGACTTCAATGGACAATAATTCCAT
TTTAGCAATTTGAGTTTAAGGGGCAAATAAACGAGGCCCTGAGGTAGATCTATTTTTGACCAAA
GACCAATTTCTGACCAAAGACCAATTTCTGACCAATGACCAATTTCTAGATATTGGAGATTACG
CATGCCTTTGAACGATTCTTCGTTTATTACTAATAACGGCCTTGTCGAAAATAATACCGTGGGT
GGCACACGTATTCCAAGAACAGTTTCTGTCCC
						
					

			
		

Sequences
Splice junction sequence	TACGCATGCCTTTGAACGATTCTTCGTTTATTACTAATAACGGCCTTGTCGAAAATAATACCGT GGGTGGCACACGTATTCCAAGAACAGTTTCTGTCCCctggatgccttcccatagcttctcatgc ttgcagccgctcacatcgagaaaagtgagatattctgggcgaaattcacaaggcatacacctca taaggcag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1224 Transcript exons: 9489372-9489851,9489968-9490378,9490479-9490811 CTGGATGCCTTCCCATAGCTTCTCATGCTTGCAGCCGCTCACATCGAGAAAAGTGAGATATTCT GGGCGAAATTCACAAGGCATACACCTCATAAGGCAGTCGAGATAATCTAGTCCAGCAGGGAGAT TCTTGTTCCAGAAACAATCTTCTACCTCGATCTCATTTCTATCTTGCAGAATTTCAAAGTATGA ACATCCCATTTTGATTGCTGGGAAATTTCTCAAATTCGGGCATCCAGTGAGATTGAGGTACTCG AGAGATTCCAAGTTGAGATCGGTTGGAAAACTCTCTAGCTTTTTGCAATCTCTCATATCTAAAT TGATCAATTTAGTGGCATTCTGAATCGAGGAAGGAAGTGTCACCAAAGATTCGCATCCAAAAAG ATATAGTCTCTCCAGGTTTATGGCTAAAGAAAGATCTGGAATTTCTTTCAAATATTTGGAACCA TGCAGATACATCTCCTTGAGGCTTCCAAGTGGCTGAGTTCCATCCCACAGCTTCTCAAGGTCAC TATTCTCCATTCTGAGTTCAACTAGATACTCAGCCTTAAAATTAGAAGGCAAACGCTTCACTGG ACAATAATCCCACCATAGCCTTTTGAGTTTACGTGGCAAGTAAATGAGGCCTTGAGTGCCTTCC ATACTTGACCAATCAACTGATAGATATTCGAGATTACACATGCCTTCTAATGATTTTAAATCTA TTAATAGCACCCCCGAACAATATAACGTCCTCAGTTTAATGGCATTCTGAATCGAGGAAGGAAG TGTCACCAAAGATTCGCATTTAGAAAGATTTAATTCCTCGAGGTTTATGGCTAAAGAAAGATCT GGAATTTCTTTCAAATTGTTGGAACACCCCAAATCCATCTTCTTGAGACTTCCAAGGGGCAGAG TTCCTTCCCACAGTTTCTCAAGCTTACTATACTTCATTATGAGGTTAACTAGATATTCCGCCTT AAAAGTAGATGGCAAAGACTTCAATGGACAATAATTCCATTTTAGCAATTTGAGTTTAAGGGGC AAATAAACGAGGCCCTGAGGTAGATCTATTTTTGACCAAAGACCAATTTCTGACCAAAGACCAA TTTCTGACCAATGACCAATTTCTAGATATTGGAGATTACGCATGCCTTTGAACGATTCTTCGTT TATTACTAATAACGGCCTTGTCGAAAATAATACCGTGGGTGGCACACGTATTCCAAGAACAGTT TCTGTCCC Transcript length: 479 Transcript exons: 9489372-9489500,9489968-9490123,9490203-9490305,9490721- 9490811 CTGGATGCCTTCCCATAGCTTCTCATGCTTGCAGCCGCTCACATCGAGAAAAGTGAGATATTCT GGGCGAAATTCACAAGGCATACACCTCATAAGGCAGTCGAGATAATCTAGTCCAGCAGGGAGAT TCTGAGTTCCATCCCACAGCTTCTCAAGGTCACTATTCTCCATTCTGAGTTCAACTAGATACTC AGCCTTAAAATTAGAAGGCAAACGCTTCACTGGACAATAATCCCACCATAGCCTTTTGAGTTTA CGTGGCAAGTAAATGAGGCCTTGAGTGCCCCCGAACAATATAACGTCCTCAGTTTAATGGCATT CTGAATCGAGGAAGGAAGTGTCACCAAAGATTCGCATTTAGAAAGATTTAATTCCTCGAGGTTT ATGGCTTTGAACGATTCTTCGTTTATTACTAATAACGGCCTTGTCGAAAATAATACCGTGGGTG GCACACGTATTCCAAGAACAGTTTCTGTCCC Transcript length: 784 Transcript exons: 9489372-9489601,9489968-9490164,9490220-9490379,9490609- 9490709,9490716-9490811 CTGGATGCCTTCCCATAGCTTCTCATGCTTGCAGCCGCTCACATCGAGAAAAGTGAGATATTCT GGGCGAAATTCACAAGGCATACACCTCATAAGGCAGTCGAGATAATCTAGTCCAGCAGGGAGAT TCTTGTTCCAGAAACAATCTTCTACCTCGATCTCATTTCTATCTTGCAGAATTTCAAAGTATGA ACATCCCATTTTGATTGCTGGGAAATTTCTCAAATTCGCTGAGTTCCATCCCACAGCTTCTCAA GGTCACTATTCTCCATTCTGAGTTCAACTAGATACTCAGCCTTAAAATTAGAAGGCAAACGCTT CACTGGACAATAATCCCACCATAGCCTTTTGAGTTTACGTGGCAAGTAAATGAGGCCTTGAGTG CCTTCCATACTTGACCAATCAACTGATAGATATTCGAGATTACCCTCAGTTTAATGGCATTCTG AATCGAGGAAGGAAGTGTCACCAAAGATTCGCATTTAGAAAGATTTAATTCCTCGAGGTTTATG GCTAAAGAAAGATCTGGAATTTCTTTCAAATTGTTGGAACACCCCAAATCCATCTTCTTGAGAC TTCCAAGGGGCGGCAAATAAACGAGGCCCTGAGGTAGATCTATTTTTGACCAAAGACCAATTTC TGACCAAAGACCAATTTCTGACCAATGACCAATTTCTAGATATTGGAGCATGCCTTTGAACGAT TCTTCGTTTATTACTAATAACGGCCTTGTCGAAAATAATACCGTGGGTGGCACACGTATTCCAA GAACAGTTTCTGTCCC
Genomic sequence	CTGGATGCCTTCCCATAGCTTCTCATGCTTGCAGCCGCTCACATCGAGAAAAGTGAGATATTCT GGGCGAAATTCACAAGGCATACACCTCATAAGGCAGTCGAGATAATCTAGTCCAGCAGGGAGAT TCTTGTTCCAGAAACAATCTTCTACCTCGATCTCATTTCTATCTTGCAGAATTTCAAAGTATGA ACATCCCATTTTGATTGCTGGGAAATTTCTCAAATTCGGGCATCCAGTGAGATTGAGGTACTCG AGAGATTCCAAGTTGAGATCGGTTGGAAAACTCTCTAGCTTTTTGCAATCTCTCATATCTAAAT TGATCAATTTAGTGGCATTCTGAATCGAGGAAGGAAGTGTCACCAAAGATTCGCATCCAAAAAG ATATAGTCTCTCCAGGTTTATGGCTAAAGAAAGATCTGGAATTTCTTTCAAATATTTGGAACCA TGCAGATACATCTCCTTGAGGCTTCCAAGTGGCTGATAACAAAATAGGGGAAAAGAGAGTACAC GCGTTAATGAATATTTTAAACAGATTCATTTTTGTTTTTCTAACATATTTATGTTTAGAAATTG ATCACTAATAGAATTAGTACCTGAGTTCCATCCCACAGCTTCTCAAGGTCACTATTCTCCATTC TGAGTTCAACTAGATACTCAGCCTTAAAATTAGAAGGCAAACGCTTCACTGGACAATAATCCCA CCATAGCCTTTTGAGTTTACGTGGCAAGTAAATGAGGCCTTGAGTGCCTTCCATACTTGACCAA TCAACTGATAGATATTCGAGATTACACATGCCTTCTAATGATTTTAAATCTATTAATAGCACCC CCGAACAATATAACGTCCTCAGTTTAATGGCATTCTGAATCGAGGAAGGAAGTGTCACCAAAGA TTCGCATTTAGAAAGATTTAATTCCTCGAGGTTTATGGCTAAAGAAAGATCTGGAATTTCTTTC AAATTGTTGGAACACCCCAAATCCATCTTCTTGAGACTTCCAAGGGGCTGAAAACAAAATATGG AAAAAGAGAATACACACGTTCACAAATATACCACAATTTTCTGTTCTAAAAACTGACAACTAAT AAAAATTTAGAATTCGTACCAGAGTTCCTTCCCACAGTTTCTCAAGCTTACTATACTTCATTAT GAGGTTAACTAGATATTCCGCCTTAAAAGTAGATGGCAAAGACTTCAATGGACAATAATTCCAT TTTAGCAATTTGAGTTTAAGGGGCAAATAAACGAGGCCCTGAGGTAGATCTATTTTTGACCAAA GACCAATTTCTGACCAAAGACCAATTTCTGACCAATGACCAATTTCTAGATATTGGAGATTACG CATGCCTTTGAACGATTCTTCGTTTATTACTAATAACGGCCTTGTCGAAAATAATACCGTGGGT GGCACACGTATTCCAAGAACAGTTTCTGTCCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.468216738

Conservation Information
Conserved circRNAs	NA
PMCS	0.468216738

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							9490719-9489374(-)
						
					

						Potential amino acid sequence
						
							MRNLQYLEIGHWSEIGLWSEIGLWSKIDLPQGLVYLPLKLKLLKWNYCPLKSLPSTFKAEYLVN
LIMKYSKLEKLWEGTLPLGSLKKMDLGCSNNLKEIPDLSLAINLEELNLSKCESLVTLPSSIQN
AIKLRTLYCSGVLLIDLKSLEGMCNLEYLSVDWSSMEGTQGLIYLPRKLKRLWWDYCPVKRLPS
NFKAEYLVELRMENSDLEKLWDGTQPLGSLKEMYLHGSKYLKEIPDLSLAINLERLYLFGCESL
VTLPSSIQNATKLINLDMRDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMGCSYFEILQ
DRNEIEVEDCFWNKNLPAGLDYLDCLMRCMPCEFRPEYLTFLDVSGCKHEKLWEGIQGTETVLG
IRVPPTVLFSTRPLLVINEESFKGMRNLQYLEIGHWSEIGLWSEIGLWSKIDLPQGLVYLPLKL
KLLKWNYCPLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKKMDLGCSNNLKEIPDLSL
AINLEELNLSKCESLVTLPSSIQNAIKLRTLYCSGVLLIDLKSLEGMCNLEYLSVDWSSMEGTQ
GLIYLPRKLKRLWWDYCPVKRLPSNFKAEYLVELRMENSDLEKLWDGTQPLGSLKEMYLHGSKY
LKEIPDLSLAINLERLYLFGCESLVTLPSSIQNATKLINLDMRDCKKLESFPTDLNLESLEYLN
LTGCPNLRNFPAIKMGCSYFEILQDRNEIEVEDCFWNKNLPAGLDYLDCLMRCMPCEFRPEYLT
FLDVSGCKHEKLWEGIQGTETVLGIRVPPTVLFSTRPLLVINEESFKGMRNLQYLEIGHWSEIG
LWSEIGLWSKIDLPQGLVYLPLKLKLLKWNYCPLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTL
PLGSLKKMDLGCSNNLKEIPDLSLAINLEELNLSKCESLVTLPSSIQNAIKLRTLYCSGVLLID
LKSLEGMCNLEYLSVDWSSMEGTQGLIYLPRKLKRLWWDYCPVKRLPSNFKAEYLVELRMENSD
LEKLWDGTQPLGSLKEMYLHGSKYLKEIPDLSLAINLERLYLFGCESLVTLPSSIQNATKLINL
DMRDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMGCSYFEILQDRNEIEVEDCFWNKNL
PAGLDYLDCLMRCMPCEFRPEYLTFLDVSGCKHEKLWEGIQGTETVLGIRVPPTVLFSTRPLLV
INEESFKGMRNLQYLEIGHWSEIGLWSEIGLWSKIDLPQGLVYLPLKLKLLKWNYCPLKSLPST
FKAEYLVNLIMKYSKLEKLWEGTLPLGSLKKMDLGCSNNLKEIPDLSLAINLEELNLSKCESLV
TLPSSIQNAIKLRTLYCSGVLLIDLKSLEGMCNLEYLSVDWSSMEGTQGLIYLPRKLKRLWWDY
CPVKRLPSNFKAEYLVELRMENSDLEKLWDGTQPLGSLKEMYLHGSKYLKEIPDLSLAINLERL
YLFGCESLVTLPSSIQNATKLINLDMRDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMG
CSYFEILQDRNEIEVEDCFWNKNLPAGLDYLDCLMRCMPCEFRPEYLTFLDVSGCKHEKLWEGI
Q(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						response to drought stress
					

			
		

Functional Information
Coding potential	Y
Potential coding position	9490719-9489374(-)
Potential amino acid sequence	MRNLQYLEIGHWSEIGLWSEIGLWSKIDLPQGLVYLPLKLKLLKWNYCPLKSLPSTFKAEYLVN LIMKYSKLEKLWEGTLPLGSLKKMDLGCSNNLKEIPDLSLAINLEELNLSKCESLVTLPSSIQN AIKLRTLYCSGVLLIDLKSLEGMCNLEYLSVDWSSMEGTQGLIYLPRKLKRLWWDYCPVKRLPS NFKAEYLVELRMENSDLEKLWDGTQPLGSLKEMYLHGSKYLKEIPDLSLAINLERLYLFGCESL VTLPSSIQNATKLINLDMRDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMGCSYFEILQ DRNEIEVEDCFWNKNLPAGLDYLDCLMRCMPCEFRPEYLTFLDVSGCKHEKLWEGIQGTETVLG IRVPPTVLFSTRPLLVINEESFKGMRNLQYLEIGHWSEIGLWSEIGLWSKIDLPQGLVYLPLKL KLLKWNYCPLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKKMDLGCSNNLKEIPDLSL AINLEELNLSKCESLVTLPSSIQNAIKLRTLYCSGVLLIDLKSLEGMCNLEYLSVDWSSMEGTQ GLIYLPRKLKRLWWDYCPVKRLPSNFKAEYLVELRMENSDLEKLWDGTQPLGSLKEMYLHGSKY LKEIPDLSLAINLERLYLFGCESLVTLPSSIQNATKLINLDMRDCKKLESFPTDLNLESLEYLN LTGCPNLRNFPAIKMGCSYFEILQDRNEIEVEDCFWNKNLPAGLDYLDCLMRCMPCEFRPEYLT FLDVSGCKHEKLWEGIQGTETVLGIRVPPTVLFSTRPLLVINEESFKGMRNLQYLEIGHWSEIG LWSEIGLWSKIDLPQGLVYLPLKLKLLKWNYCPLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTL PLGSLKKMDLGCSNNLKEIPDLSLAINLEELNLSKCESLVTLPSSIQNAIKLRTLYCSGVLLID LKSLEGMCNLEYLSVDWSSMEGTQGLIYLPRKLKRLWWDYCPVKRLPSNFKAEYLVELRMENSD LEKLWDGTQPLGSLKEMYLHGSKYLKEIPDLSLAINLERLYLFGCESLVTLPSSIQNATKLINL DMRDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMGCSYFEILQDRNEIEVEDCFWNKNL PAGLDYLDCLMRCMPCEFRPEYLTFLDVSGCKHEKLWEGIQGTETVLGIRVPPTVLFSTRPLLV INEESFKGMRNLQYLEIGHWSEIGLWSEIGLWSKIDLPQGLVYLPLKLKLLKWNYCPLKSLPST FKAEYLVNLIMKYSKLEKLWEGTLPLGSLKKMDLGCSNNLKEIPDLSLAINLEELNLSKCESLV TLPSSIQNAIKLRTLYCSGVLLIDLKSLEGMCNLEYLSVDWSSMEGTQGLIYLPRKLKRLWWDY CPVKRLPSNFKAEYLVELRMENSDLEKLWDGTQPLGSLKEMYLHGSKYLKEIPDLSLAINLERL YLFGCESLVTLPSSIQNATKLINLDMRDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMG CSYFEILQDRNEIEVEDCFWNKNLPAGLDYLDCLMRCMPCEFRPEYLTFLDVSGCKHEKLWEGI Q(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	response to drought stress

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017;Pan et al., 2017;Zhang et al., 2019

circRNA

Detail information of AT4G16860_circ_g.1

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