Plant Circular RNA Database

Detail information of AT2G25730_circ_g.3

			
						 General Information
					
						CircRNA Name
						AT2G25730_circ_g.3
					
						ID in PlantcircBase
						ath_circ_014807
					
						Alias
						Ath_circ_FC1331
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 10957464-10960121  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, KNIFE, PcircRNA_finder
					
						Parent gene
						
							AT2G25730						
					
						Parent gene annotation
						
							unknown protein
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G25730_circ_g.1 AT2G25730_circ_g.2 AT2G25730_circ_g.4 						
					
						Support reads
						10
					
						Tissues
						whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G25730.3:6
AT2G25730.1:6
AT2G25730.2:6
AT2G25730.4:6

General Information
CircRNA Name	AT2G25730_circ_g.3
ID in PlantcircBase	ath_circ_014807
Alias	Ath_circ_FC1331
Organism	Arabidpsis thaliana
Position	chr2: 10957464-10960121 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene	AT2G25730
Parent gene annotation	unknown protein
Parent gene strand	-
Alternative splicing	AT2G25730_circ_g.1 AT2G25730_circ_g.2 AT2G25730_circ_g.4
Support reads	10
Tissues	whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G25730.3:6 AT2G25730.1:6 AT2G25730.2:6 AT2G25730.4:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCAAAGGAGGGGGAAGACCACTTTGCGGAAAGAATAACATGCATGCATCTTTAAAGTGACCATG
GCGGAACATAAACCCAAGCAGGTTTTGGCGAGCATGctgatcccagtcatcatcctggattgtt
cccttaatgtttttgaaaagttctgtcaactgactgcctttcttcctatcagctagtgacgtag
caacacca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 900
Transcript exons: 10957464-10957579,10957657-10957739,10958118-10958206,10
958305-10958448,10959053-10959154,10959756-10960121
CTGATCCCAGTCATCATCCTGGATTGTTCCCTTAATGTTTTTGAAAAGTTCTGTCAACTGACTG
CCTTTCTTCCTATCAGCTAGTGACGTAGCAACACCAGCATATATATCAACAGCTGAGAGCTTGA
ATTCATATATAACAGAATAAGCTAAGTCGAAATTTTTCTCAACAAGAGTCTCCACTATTTCACA
TCTTCTCCTGGATGTCTCTGAATCATTTGGATTTCCAAACAAGGAATGCTTCCATGGTGCTCCT
TCAGAGTCACTGAAGGACTTCACCACATCAATCTGCATTTTCACCCGTGAGGACAACTTAACAA
GAGTTTCTTCACTCAGCTTCTCTGCGGCACTTTTTCCTCTAACACCCTTTGTAACAAGTTTTTT
TGAGTCTGAACCTCTATGACGCGCTGTCAATGCTTCTTCAAAGTGTGCCTTTGCATGCTCAAGA
TGCCTTACAGCATCCTCCTGAGTTGTAGAATTCATAAAAAGCTGAATACAACAATACCCAGAGG
TGACATAATCCTTCTTGAGTACCAGAAACTTGTATAGGTAATTGAAATGCCGGTTGATCTCAAA
GAAAGCACAGATACGAGTAAGAGCTCCAGCTATGTACTGATTTATGGCTTGATCTTGATTCTTT
GCGGATTCAAGTCTTTCTGTAATTACTTCCTCAAGGGATGAGATAGCTCCATAACCAACACAGA
ACTCGCACAAACTTTCAATGGTCCCATATTCAGTTGCCAAGGGATCAGTTCGTTGAGGTGATGA
AGATGTGCTTACTGCGCCCACAGATGAAGTTTGCAAAGGAGGGGGAAGACCACTTTGCGGAAAG
AATAACATGCATGCATCTTTAAAGTGACCATGGCGGAACATAAACCCAAGCAGGTTTTGGCGAG
CATG
Transcript length: 933
Transcript exons: 10957464-10957579,10957657-10957739,10958118-10958206,10
958305-10958481,10959053-10959154,10959756-10960121
CTGATCCCAGTCATCATCCTGGATTGTTCCCTTAATGTTTTTGAAAAGTTCTGTCAACTGACTG
CCTTTCTTCCTATCAGCTAGTGACGTAGCAACACCAGCATATATATCAACAGCTGAGAGCTTGA
ATTCATATATAACAGAATAAGCTAAGTCGAAATTTTTCTCAACAAGAGTCTCCACTATTTCACA
TCTTCTCCTGGATGTCTCTGAATCATTTGGATTTCCAAACAAGGAATGCTTCCATGGTGCTCCT
TCAGAGTCACTGAAGGACTTCACCACATCAATCTGCATTTTCACCCGTGAGGACAACTTAACAA
GAGTTTCTTCACTCAGCTTCTCTGCGGCACTTTTTCCTCTAACACCCTTTGTAACAAGTTTTTT
TGAGTCTGAACCTCTATGACGCGCTGTCAATGCTTCTTCAAAGTGTGCCTGTACCCCGAGGATA
GTTAGAGACCAGTATTTCTTTGCATGCTCAAGATGCCTTACAGCATCCTCCTGAGTTGTAGAAT
TCATAAAAAGCTGAATACAACAATACCCAGAGGTGACATAATCCTTCTTGAGTACCAGAAACTT
GTATAGGTAATTGAAATGCCGGTTGATCTCAAAGAAAGCACAGATACGAGTAAGAGCTCCAGCT
ATGTACTGATTTATGGCTTGATCTTGATTCTTTGCGGATTCAAGTCTTTCTGTAATTACTTCCT
CAAGGGATGAGATAGCTCCATAACCAACACAGAACTCGCACAAACTTTCAATGGTCCCATATTC
AGTTGCCAAGGGATCAGTTCGTTGAGGTGATGAAGATGTGCTTACTGCGCCCACAGATGAAGTT
TGCAAAGGAGGGGGAAGACCACTTTGCGGAAAGAATAACATGCATGCATCTTTAAAGTGACCAT
GGCGGAACATAAACCCAAGCAGGTTTTGGCGAGCATG
						
					

						Genomic sequence
						
							CTGATCCCAGTCATCATCCTGGATTGTTCCCTTAATGTTTTTGAAAAGTTCTGTCAACTGACTG
CCTTTCTTCCTATCAGCTAGTGACGTAGCAACACCAGCATATATATCAACAGCTGCTTAGAAGC
AAGGGAAAAGTCAGATACCATGCACAACAACATTACACAGATATTAACATAAAACAAATAAGCA
CCTGAGAGCTTGAATTCATATATAACAGAATAAGCTAAGTCGAAATTTTTCTCAACAAGAGTCT
CCACTATTTCACATCTTCTCCTGAAAGTAAGAGCCAGGGAAAGACATATCAGCTGAAGAATTTT
CTTTAAATCTTCACCAAAGGAAATATGAATACTAAGTTTCGTCTTTCATTTTCATTTGGAGTAG
CACATCCTTCAAGGATTGCAAAAAAAACACGTGTTCAATTTATCTCGACAAGGGAAAAGCATCC
ACATCATTCATTTAATACGCATCATGGCTATGTGAAGAGAAAGCTGGAATCGATTTAGAAATAC
TAGGTAAGTCTCTCTTTGGGTGTCAAACATAAGTGGACTGGAATCATGATGACAGTGTGGAAAG
AATTACAGGTCTATAATCTACCGATACATATTCCTTAAACTTGCGTAAGGATACAAGAAATTTG
TTTTGAGGACAAACCTGGATGTCTCTGAATCATTTGGATTTCCAAACAAGGAATGCTTCCATGG
TGCTCCTTCAGAGTCACTGAAGGACTTCACCACATCAATCTATAGGAAGAATAAACCCACAAAG
GTGGAGTCATAAATCAAAAAAGCCCTACTTAATGAAAAGGATGACATAAACGGTGTTCAGACTT
CAGAGTTACCTGCATTTTCACCCGTGAGGACAACTTAACAAGAGTTTCTTCACTCAGCTTCTCT
GCGGCACTTTTTCCTCTAACACCCTTTGTAACAAGTTTTTTTGAGTCTGAACCTCTATGACGCG
CTGTCAATGCTTCTTCAAAGTGTGCCTGTACCCCGAGGATAGTTAGAGACCAGTATTTCTAGAA
AAAAAAGGAGAGAAACATGCAACATAGACGTTATCATGGTTTTGTGCAGCACTGGCATGCTTAT
GACTGCGGGCTGTTCTTCGTTTAGGCCCCAAAACAAGATGTAATATATAATTCATACAAGTAGT
TATCACATATGAATAAGTTGGTTTAAGCAACAAAAACTTGTCTTAATGTAATCCAGGCAAATTT
TAGAAAAGCTCTAGTTCAAATAATTGCATTATATTTACTTATTTAGCAAACAGAGAGAGAGAGA
AAAAAAAAAAAAAAAGCAAGGATTAAGCGTGTCTGATCCAAATTTTTGTGCCACCAACTGCCAG
AAAATCAACAAAGTCTTGCCTAATTGTTTCAACCGACTCTAAACCACTTTATAATGCTTAAAAT
TTAACATTCCACACACAAAAAAATGCATTTGAAAAACCTGCAATCAGTAAAAACATACTTTGGA
TTCACTTAGGTATTAACTGTTTTCAGATGGGCATTGCATGTAAATACATTGCGGTAATCCAATT
CAGACTCAACACAGATGGAATGGGTGGTGAGGAAAGAGCTACTGACTAGATACCTTTGCATGCT
CAAGATGCCTTACAGCATCCTCCTGAGTTGTAGAATTCATAAAAAGCTGAATACAACAATACCC
AGAGGTGACATAATCCTTCTTGAGTACCTGAACAATTATAAAAATGAGTGAATTAGCATTATGT
TTCACAAGTATTTTAGAAAAAAAGTTAGGCTCCCAGTATGTAGCATACAGCTTTACGAGCCACT
TGTCTCTCTAAACAGAAAAAATAACATTAATAGGCCATGATCGACAACACATGATCACAAAAAC
GTTTTTGTTTCATCAGAGTTAAAATTTCTACCAATACCATAAATGCACAGCCTTAGTCATAAAA
ATCATACTATAAACCTCTTACAACTACAGGATCTGCAGTTTTAAGGATGCACTGGAAACTAATT
TCAAGCTTAGGATCAGGGGTTATGGTTCAGATTGCAGAAGAGGAAGTGCAAAGCAGAGAGAATA
AGACTAGCTAAGAATTTTGGGATAAGATGCACAGTTGTGTACTCTTATATATGCAGTGATTATC
TGTCTACATGACTACATGACTCTATAACTGTACAGCAGAACCTATGCGCATGCAGCACATGAAA
CAAAGGAAATTTAGATCTAGTTACTTGTTAGTATAGCAAAAGGTGAAAATTTCCAAGTGGAAAC
AACCCAACGGTAAGTTATAGTTAAAGAACCATGACAGCAAAGATGACCTTACCAGAAACTTGTA
TAGGTAATTGAAATGCCGGTTGATCTCAAAGAAAGCACAGATACGAGTAAGAGCTCCAGCTATG
TACTGATTTATGGCTTGATCTTGATTCTTTGCGGATTCAAGTCTTTCTGTAATTACTTCCTCAA
GGGATGAGATAGCTCCATAACCAACACAGAACTCGCACAAACTTTCAATGGTCCCATATTCAGT
TGCCAAGGGATCAGTTCGTTGAGGTGATGAAGATGTGCTTACTGCGCCCACAGATGAAGTTTGC
AAAGGAGGGGGAAGACCACTTTGCGGAAAGAATAACATGCATGCATCTTTAAAGTGACCATGGC
GGAACATAAACCCAAGCAGGTTTTGGCGAGCATG
						
					

			
		

Sequences
Splice junction sequence	GCAAAGGAGGGGGAAGACCACTTTGCGGAAAGAATAACATGCATGCATCTTTAAAGTGACCATG GCGGAACATAAACCCAAGCAGGTTTTGGCGAGCATGctgatcccagtcatcatcctggattgtt cccttaatgtttttgaaaagttctgtcaactgactgcctttcttcctatcagctagtgacgtag caacacca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 900 Transcript exons: 10957464-10957579,10957657-10957739,10958118-10958206,10 958305-10958448,10959053-10959154,10959756-10960121 CTGATCCCAGTCATCATCCTGGATTGTTCCCTTAATGTTTTTGAAAAGTTCTGTCAACTGACTG CCTTTCTTCCTATCAGCTAGTGACGTAGCAACACCAGCATATATATCAACAGCTGAGAGCTTGA ATTCATATATAACAGAATAAGCTAAGTCGAAATTTTTCTCAACAAGAGTCTCCACTATTTCACA TCTTCTCCTGGATGTCTCTGAATCATTTGGATTTCCAAACAAGGAATGCTTCCATGGTGCTCCT TCAGAGTCACTGAAGGACTTCACCACATCAATCTGCATTTTCACCCGTGAGGACAACTTAACAA GAGTTTCTTCACTCAGCTTCTCTGCGGCACTTTTTCCTCTAACACCCTTTGTAACAAGTTTTTT TGAGTCTGAACCTCTATGACGCGCTGTCAATGCTTCTTCAAAGTGTGCCTTTGCATGCTCAAGA TGCCTTACAGCATCCTCCTGAGTTGTAGAATTCATAAAAAGCTGAATACAACAATACCCAGAGG TGACATAATCCTTCTTGAGTACCAGAAACTTGTATAGGTAATTGAAATGCCGGTTGATCTCAAA GAAAGCACAGATACGAGTAAGAGCTCCAGCTATGTACTGATTTATGGCTTGATCTTGATTCTTT GCGGATTCAAGTCTTTCTGTAATTACTTCCTCAAGGGATGAGATAGCTCCATAACCAACACAGA ACTCGCACAAACTTTCAATGGTCCCATATTCAGTTGCCAAGGGATCAGTTCGTTGAGGTGATGA AGATGTGCTTACTGCGCCCACAGATGAAGTTTGCAAAGGAGGGGGAAGACCACTTTGCGGAAAG AATAACATGCATGCATCTTTAAAGTGACCATGGCGGAACATAAACCCAAGCAGGTTTTGGCGAG CATG Transcript length: 933 Transcript exons: 10957464-10957579,10957657-10957739,10958118-10958206,10 958305-10958481,10959053-10959154,10959756-10960121 CTGATCCCAGTCATCATCCTGGATTGTTCCCTTAATGTTTTTGAAAAGTTCTGTCAACTGACTG CCTTTCTTCCTATCAGCTAGTGACGTAGCAACACCAGCATATATATCAACAGCTGAGAGCTTGA ATTCATATATAACAGAATAAGCTAAGTCGAAATTTTTCTCAACAAGAGTCTCCACTATTTCACA TCTTCTCCTGGATGTCTCTGAATCATTTGGATTTCCAAACAAGGAATGCTTCCATGGTGCTCCT TCAGAGTCACTGAAGGACTTCACCACATCAATCTGCATTTTCACCCGTGAGGACAACTTAACAA GAGTTTCTTCACTCAGCTTCTCTGCGGCACTTTTTCCTCTAACACCCTTTGTAACAAGTTTTTT TGAGTCTGAACCTCTATGACGCGCTGTCAATGCTTCTTCAAAGTGTGCCTGTACCCCGAGGATA GTTAGAGACCAGTATTTCTTTGCATGCTCAAGATGCCTTACAGCATCCTCCTGAGTTGTAGAAT TCATAAAAAGCTGAATACAACAATACCCAGAGGTGACATAATCCTTCTTGAGTACCAGAAACTT GTATAGGTAATTGAAATGCCGGTTGATCTCAAAGAAAGCACAGATACGAGTAAGAGCTCCAGCT ATGTACTGATTTATGGCTTGATCTTGATTCTTTGCGGATTCAAGTCTTTCTGTAATTACTTCCT CAAGGGATGAGATAGCTCCATAACCAACACAGAACTCGCACAAACTTTCAATGGTCCCATATTC AGTTGCCAAGGGATCAGTTCGTTGAGGTGATGAAGATGTGCTTACTGCGCCCACAGATGAAGTT TGCAAAGGAGGGGGAAGACCACTTTGCGGAAAGAATAACATGCATGCATCTTTAAAGTGACCAT GGCGGAACATAAACCCAAGCAGGTTTTGGCGAGCATG
Genomic sequence	CTGATCCCAGTCATCATCCTGGATTGTTCCCTTAATGTTTTTGAAAAGTTCTGTCAACTGACTG CCTTTCTTCCTATCAGCTAGTGACGTAGCAACACCAGCATATATATCAACAGCTGCTTAGAAGC AAGGGAAAAGTCAGATACCATGCACAACAACATTACACAGATATTAACATAAAACAAATAAGCA CCTGAGAGCTTGAATTCATATATAACAGAATAAGCTAAGTCGAAATTTTTCTCAACAAGAGTCT CCACTATTTCACATCTTCTCCTGAAAGTAAGAGCCAGGGAAAGACATATCAGCTGAAGAATTTT CTTTAAATCTTCACCAAAGGAAATATGAATACTAAGTTTCGTCTTTCATTTTCATTTGGAGTAG CACATCCTTCAAGGATTGCAAAAAAAACACGTGTTCAATTTATCTCGACAAGGGAAAAGCATCC ACATCATTCATTTAATACGCATCATGGCTATGTGAAGAGAAAGCTGGAATCGATTTAGAAATAC TAGGTAAGTCTCTCTTTGGGTGTCAAACATAAGTGGACTGGAATCATGATGACAGTGTGGAAAG AATTACAGGTCTATAATCTACCGATACATATTCCTTAAACTTGCGTAAGGATACAAGAAATTTG TTTTGAGGACAAACCTGGATGTCTCTGAATCATTTGGATTTCCAAACAAGGAATGCTTCCATGG TGCTCCTTCAGAGTCACTGAAGGACTTCACCACATCAATCTATAGGAAGAATAAACCCACAAAG GTGGAGTCATAAATCAAAAAAGCCCTACTTAATGAAAAGGATGACATAAACGGTGTTCAGACTT CAGAGTTACCTGCATTTTCACCCGTGAGGACAACTTAACAAGAGTTTCTTCACTCAGCTTCTCT GCGGCACTTTTTCCTCTAACACCCTTTGTAACAAGTTTTTTTGAGTCTGAACCTCTATGACGCG CTGTCAATGCTTCTTCAAAGTGTGCCTGTACCCCGAGGATAGTTAGAGACCAGTATTTCTAGAA AAAAAAGGAGAGAAACATGCAACATAGACGTTATCATGGTTTTGTGCAGCACTGGCATGCTTAT GACTGCGGGCTGTTCTTCGTTTAGGCCCCAAAACAAGATGTAATATATAATTCATACAAGTAGT TATCACATATGAATAAGTTGGTTTAAGCAACAAAAACTTGTCTTAATGTAATCCAGGCAAATTT TAGAAAAGCTCTAGTTCAAATAATTGCATTATATTTACTTATTTAGCAAACAGAGAGAGAGAGA AAAAAAAAAAAAAAAGCAAGGATTAAGCGTGTCTGATCCAAATTTTTGTGCCACCAACTGCCAG AAAATCAACAAAGTCTTGCCTAATTGTTTCAACCGACTCTAAACCACTTTATAATGCTTAAAAT TTAACATTCCACACACAAAAAAATGCATTTGAAAAACCTGCAATCAGTAAAAACATACTTTGGA TTCACTTAGGTATTAACTGTTTTCAGATGGGCATTGCATGTAAATACATTGCGGTAATCCAATT CAGACTCAACACAGATGGAATGGGTGGTGAGGAAAGAGCTACTGACTAGATACCTTTGCATGCT CAAGATGCCTTACAGCATCCTCCTGAGTTGTAGAATTCATAAAAAGCTGAATACAACAATACCC AGAGGTGACATAATCCTTCTTGAGTACCTGAACAATTATAAAAATGAGTGAATTAGCATTATGT TTCACAAGTATTTTAGAAAAAAAGTTAGGCTCCCAGTATGTAGCATACAGCTTTACGAGCCACT TGTCTCTCTAAACAGAAAAAATAACATTAATAGGCCATGATCGACAACACATGATCACAAAAAC GTTTTTGTTTCATCAGAGTTAAAATTTCTACCAATACCATAAATGCACAGCCTTAGTCATAAAA ATCATACTATAAACCTCTTACAACTACAGGATCTGCAGTTTTAAGGATGCACTGGAAACTAATT TCAAGCTTAGGATCAGGGGTTATGGTTCAGATTGCAGAAGAGGAAGTGCAAAGCAGAGAGAATA AGACTAGCTAAGAATTTTGGGATAAGATGCACAGTTGTGTACTCTTATATATGCAGTGATTATC TGTCTACATGACTACATGACTCTATAACTGTACAGCAGAACCTATGCGCATGCAGCACATGAAA CAAAGGAAATTTAGATCTAGTTACTTGTTAGTATAGCAAAAGGTGAAAATTTCCAAGTGGAAAC AACCCAACGGTAAGTTATAGTTAAAGAACCATGACAGCAAAGATGACCTTACCAGAAACTTGTA TAGGTAATTGAAATGCCGGTTGATCTCAAAGAAAGCACAGATACGAGTAAGAGCTCCAGCTATG TACTGATTTATGGCTTGATCTTGATTCTTTGCGGATTCAAGTCTTTCTGTAATTACTTCCTCAA GGGATGAGATAGCTCCATAACCAACACAGAACTCGCACAAACTTTCAATGGTCCCATATTCAGT TGCCAAGGGATCAGTTCGTTGAGGTGATGAAGATGTGCTTACTGCGCCCACAGATGAAGTTTGC AAAGGAGGGGGAAGACCACTTTGCGGAAAGAATAACATGCATGCATCTTTAAAGTGACCATGGC GGAACATAAACCCAAGCAGGTTTTGGCGAGCATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.173119341

Conservation Information
Conserved circRNAs	NA
PMCS	0.173119341

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							10960095-10957466(-)
						
						Potential amino acid sequence
						
							MFRHGHFKDACMLFFPQSGLPPPLQTSSVGAVSTSSSPQRTDPLATEYGTIESLCEFCVGYGAI
SSLEEVITERLESAKNQDQAINQYIAGALTRICAFFEINRHFNYLYKFLVLKKDYVTSGYCCIQ
LFMNSTTQEDAVRHLEHAKAHFEEALTARHRGSDSKKLVTKGVRGKSAAEKLSEETLVKLSSRV
KMQIDVVKSFSDSEGAPWKHSLFGNPNDSETSRRRCEIVETLVEKNFDLAYSVIYEFKLSAVDI
YAGVATSLADRKKGSQLTELFKNIKGTIQDDDWDQHARQNLLGFMFRHGHFKDACMLFFPQSGL
PPPLQTSSVGAVSTSSSPQRTDPLATEYGTIESLCEFCVGYGAISSLEEVITERLESAKNQDQA
INQYIAGALTRICAFFEINRHFNYLYKFLVLKKDYVTSGYCCIQLFMNSTTQEDAVRHLEHAKA
HFEEALTARHRGSDSKKLVTKGVRGKSAAEKLSEETLVKLSSRVKMQIDVVKSFSDSEGAPWKH
SLFGNPNDSETSRRRCEIVETLVEKNFDLAYSVIYEFKLSAVDIYAGVATSLADRKKGSQLTEL
FKNIKGTIQDDDWDQHARQNLLGFMFRHGHFKDACMLFFPQSGLPPPLQTSSVGAVSTSSSPQR
TDPLATEYGTIESLCEFCVGYGAISSLEEVITERLESAKNQDQAINQYIAGALTRICAFFEINR
HFNYLYKFLVLKKDYVTSGYCCIQLFMNSTTQEDAVRHLEHAKAHFEEALTARHRGSDSKKLVT
KGVRGKSAAEKLSEETLVKLSSRVKMQIDVVKSFSDSEGAPWKHSLFGNPNDSETSRRRCEIVE
TLVEKNFDLAYSVIYEFKLSAVDIYAGVATSLADRKKGSQLTELFKNIKGTIQDDDWDQHARQN
LLGFMFRHGHFKDACMLFFPQSGLPPPLQTSSVGAVSTSSSPQRTDPLATEYGTIESLCEFCVG
YGAISSLEEVITERLESAKNQDQAINQYIAGALTRICAFFEINRHFNYLYKFLVLKKDYVTSGY
CCIQLFMNSTTQEDAVRHLEHAKAHFEEALTARHRGSDSKKLVTKGVRGKSAAEKLSEETLVKL
SSRVKMQIDVVKSFSDSEGAPWKHSLFGNPNDSETSRRRCEIVETLVEKNFDLAYSVIYEFKLS
AVDIYAGVATSLADRKKGSQLTELFKNIKGTIQDDDWDQ(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	10960095-10957466(-)
Potential amino acid sequence	MFRHGHFKDACMLFFPQSGLPPPLQTSSVGAVSTSSSPQRTDPLATEYGTIESLCEFCVGYGAI SSLEEVITERLESAKNQDQAINQYIAGALTRICAFFEINRHFNYLYKFLVLKKDYVTSGYCCIQ LFMNSTTQEDAVRHLEHAKAHFEEALTARHRGSDSKKLVTKGVRGKSAAEKLSEETLVKLSSRV KMQIDVVKSFSDSEGAPWKHSLFGNPNDSETSRRRCEIVETLVEKNFDLAYSVIYEFKLSAVDI YAGVATSLADRKKGSQLTELFKNIKGTIQDDDWDQHARQNLLGFMFRHGHFKDACMLFFPQSGL PPPLQTSSVGAVSTSSSPQRTDPLATEYGTIESLCEFCVGYGAISSLEEVITERLESAKNQDQA INQYIAGALTRICAFFEINRHFNYLYKFLVLKKDYVTSGYCCIQLFMNSTTQEDAVRHLEHAKA HFEEALTARHRGSDSKKLVTKGVRGKSAAEKLSEETLVKLSSRVKMQIDVVKSFSDSEGAPWKH SLFGNPNDSETSRRRCEIVETLVEKNFDLAYSVIYEFKLSAVDIYAGVATSLADRKKGSQLTEL FKNIKGTIQDDDWDQHARQNLLGFMFRHGHFKDACMLFFPQSGLPPPLQTSSVGAVSTSSSPQR TDPLATEYGTIESLCEFCVGYGAISSLEEVITERLESAKNQDQAINQYIAGALTRICAFFEINR HFNYLYKFLVLKKDYVTSGYCCIQLFMNSTTQEDAVRHLEHAKAHFEEALTARHRGSDSKKLVT KGVRGKSAAEKLSEETLVKLSSRVKMQIDVVKSFSDSEGAPWKHSLFGNPNDSETSRRRCEIVE TLVEKNFDLAYSVIYEFKLSAVDIYAGVATSLADRKKGSQLTELFKNIKGTIQDDDWDQHARQN LLGFMFRHGHFKDACMLFFPQSGLPPPLQTSSVGAVSTSSSPQRTDPLATEYGTIESLCEFCVG YGAISSLEEVITERLESAKNQDQAINQYIAGALTRICAFFEINRHFNYLYKFLVLKKDYVTSGY CCIQLFMNSTTQEDAVRHLEHAKAHFEEALTARHRGSDSKKLVTKGVRGKSAAEKLSEETLVKL SSRVKMQIDVVKSFSDSEGAPWKHSLFGNPNDSETSRRRCEIVETLVEKNFDLAYSVIYEFKLS AVDIYAGVATSLADRKKGSQLTELFKNIKGTIQDDDWDQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017;Chen et al., 2017a

circRNA

Detail information of AT2G25730_circ_g.3

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