Detail information of Os04g0590200_circ_g.1


General Information
CircRNA Name Os04g0590200_circ_g.1
ID in PlantcircBase osa_circ_025024
Alias Os_ciR1256
Organism Oryza sativa
Position chr4: 29831486-29832567  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os04g0590200
Parent gene annotation Protein of unknown function DUF296 domain containing protein. (O
s04t0590200-01)
Parent gene strand -
Alternative splicing Os04g0590200_circ_g.2
Support reads 13
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0590200-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGGACGTAGCGCGTCGCGGCGGTGCCGAGGTCGAGACCTGCCATGCTTCTCCACTAGCTCAT
GTACTGATGTAGCAGCAGCAGAGCGCCTCTCTAGCTcttttgcaagctgcggccatgaaccctt
gcgatgtcctttcctttgcttcttgtgatctctcctctcatctcctctcctttcgccggagcta
cacccatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTGCAAGCTGCGGCCATGAACCCTTGCGATGTCCTTTCCTTTGCTTCTTGTGATCTCTCCT
CTCATCTCCTCTCCTTTCGCCGGAGCTACACCCATGTATGCGCATGTCAGAACGGTGGCCGTGC
GCCGGCCCAGCCATGGCCGTCGGCGCCGGGAGGGAGCTGTGAGCCGCCGCCACCGGGCATGTTG
TTGAGCGGCAGGTTGAAGAACGGGAGGCCGGCGGCAGACGGGTCCGGCGGGAACGCGCCACCCA
TGCCACCAGCATCGGCGCCGCCGCCGGGCTGCTGCATCTGCAGGCCGGCCTGCGGCGGCGGCGC
CTCCTCCTCCTCCAGTGGGAGGCGCTCGTAGGCGACGTTGGCGAAGGACGCCGCGATGACGATG
ACCGGGCCCGCGGCGTAGAGCGCGCCGACGACGTTGCCGCCGACGACCTGTCCCTGGCCCCCGG
CGAGGAAGATGGTGAGGCTGGTGGCGCCGGGGGGAGCCGGCGGCGGGAGGAAGGAGCCCGAGAG
CGACAGGATCTCGAACCTCCCGTGCAGCGACACGACGGCGCCCGCGGGCGCCGACGGCTGACGC
AGCGTCACGTTGGTGACCACGCCGCTGCCGCTCAGCACGCACACGCCGCGCTGCCGCCGGCGCG
CGTACGTGGAGACGCACTCGAACACGTCGCAGCCGCTCCCGACCTCCAGGATGTGGGCGCGCAG
CGTGTTGGCGCTCTCCCGCGTGATGATCACCGGCGGCTTCGGCTTGTTCTTGGAGCCAGGCGGG
CGCCCCCGCGGCCGGCGCGCCACCACGTCGCCGGGCCCGCCGACCGCGCCGTCGGTGGCAGGAC
CTGACGACGAGGACCCGCCGTCATGGTCCCCGTACGGCCCGCCGTTGCTGTTGCCGCCGCCGCC
GCTGCCGTTGGGGTCGTCGTCGGACGGCTCGTGCTGCTTGGCGTAGCTGTGCTGCAGCTGGAGG
TCGGGGTGGAGGTGGTGGAGCTGGTGGACGTAGCGCGTCGCGGCGGTGCCGAGGTCGAGACCTG
CCATGCTTCTCCACTAGCTCATGTACTGATGTAGCAGCAGCAGAGCGCCTCTCTAGCT
Conservation Information
Conserved circRNAs osi_circ_014720
PMCS 0.404554097
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015