Detail information of BGIOSGA015028_circ_g.1


General Information
CircRNA Name BGIOSGA015028_circ_g.1
ID in PlantcircBase osi_circ_014396
Alias Chr04:22442127_22443737(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 20152473-20154083  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2, find_circ
Parent gene BGIOSGA015028
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015028_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015028-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAGTCTCATTGAGTGCTATCAATTTATCTCTCAGTAGCCAAAACTCATTGAAGAATACAGTTG
GGTAGTAGTTGTTTGAAGATGGATCAACATTCAAATcttcattgcaattgcgtcatactccttt
gtcttattctgtgcatatgattcacggtcccggaacctcaacatgggaatctttccacttctat
cgatctga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCATTGCAATTGCGTCATACTCCTTTGTCTTATTCTGTGCATATGATTCACGGTCCCGGAAC
CTCAACATGGGAATCTTTCCACTTCTATCGATCTGAACAGGAGTGAAGAGTTGTGACAAATTGA
TCAAAGAAAACATCAGAACTGATGCAAAGATTTCTACATCATTGAGCTCAAAAGATGGATGCAA
TCACGCTATATAGACAAACACAATTATGTATGACGAAAAAATATCTTGCCATAGACTATACCTA
GTACCAAATATTAATGGTTTGACGTAACAAGAAAAGCCATAAAAATAAAGGGCTGATTTTGAGT
TGACTAAAATCACCAATACATTGGACTTCATGAACAGAATTGGCAAATGCACAAAACAAAGTTA
AATCCAATACTCAAAATGGAGTAATCAGAGAAAAATCCACAATAATCATGAGATCTTTGTTATC
TCAATATACTAATGCTTTATCCATTAAAAATACCAGTGCTTTATTCAGTGCTATAAATACAACT
TTTCAGGTGAAGATCACTAGATCTATCAGTTCCATTTATACATTTTATTACTTTCACTTTTATG
CATAAGATGGGTTCCATTCATACAATTATATCTGACTGAAAAATATTAAGAATAACAGAACTAA
GTGACAAAATGACCATAAAGGATAGAGAACCATATCTTAAATGGCCTACCTCGACATGCATTGC
TTTTCCAATCTTCCAAAATTCAATGCAAACACCAATTCCAGAGCTACCAAGGATCATCCATGAA
GTCTCATTGTCGAGCAGGTAGAGGAAAATAATCAGCTGGCATACAAAGTTCAGAACCACGGATT
TTGCTGATAGACCTTCCATGGACTTGTTCTTATTCCAGAACTGAATATCTAAGCAATGGCACAA
GAATATCATCAAATGTAAATGGAGTTACTTTTGGATAAAATACTTATGGTTACCATATACATGG
TAATATGTAACTATGCAATGTACGTACCATTTTTGAAAGCCAAAAAATCAAACAGAGAGTGGAA
CAGAGAAACAATCATGGTCAATCCCAAAAAGTATGGATTTCCTTCAAGGAAAACTCTCTGCAAA
TAACAAAAAGGAGTCGAGGGTCAGCTCAATGAGTAATCAAAACCATCCAAGGAAGATGGAAACT
TGTAACAATATCATTCAATCAACATACTAATAATATCACAAAAGTAACCATCTATAAGGCTCTA
AAGAATATGAAATAGAGGTGCATATGTAGTATACTAGTGGAATCTCAGCAAGATAAAGCAGGTA
CTGTAAGGGTGGTCACAGAGCATAGAAGGGATATATAAACAAAATGTGTGTATGTGGATAGATA
CAAATTTATAATTGAGGATATCTGCATGTACCTTGAGCTCATCAGCCTCCCCTTCAAGCATACT
TCCATAACTGCGATGAACTTGGAAGGACTGCTCCATCTGAAGAAATATTTGCCACTTGGTCATG
CTAATAGGACCAACTTCAAGGTTCAAAGGCAGTTCCTCCACAGTCTCATTGAGTGCTATCAATT
TATCTCTCAGTAGCCAAAACTCATTGAAGAATACAGTTGGGTAGTAGTTGTTTGAAGATGGATC
AACATTCAAAT
Conservation Information
Conserved circRNAs osa_circ_023931
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021