Plant Circular RNA Database

Detail information of Os07g0120700_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os07g0120700_circ_g.1
					
						ID in PlantcircBase
						osa_circ_032653
					
						Alias
						Os_ciR1936
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 1097953-1099117  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os07g0120700						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os07t0120700-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						5/2
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0120700-01:3

General Information
CircRNA Name	Os07g0120700_circ_g.1
ID in PlantcircBase	osa_circ_032653
Alias	Os_ciR1936
Organism	Oryza sativa
Position	chr7: 1097953-1099117 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os07g0120700
Parent gene annotation	Conserved hypothetical protein. (Os07t0120700-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	5/2
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0120700-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CATGAAGAAGATCCTGGAAATGTTGTCGAAGTAATTTCAGGCAGCAAACAATATATGAGCAATC
CTTCTGGATGTAAGGCTTTAGCCGCATCATTATCATcaataaaagcaagagatggaaaacatga
actgggtcaaaaatgctcgagaacagtttgccaccaatcagttcagaagcccatctattctcca
tgctatct

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 211
Transcript exons: 1097953-1098033,1098988-1099117
CAATAAAAGCAAGAGATGGAAAACATGAACTGGGTCAAAAATGCTCGAGAACAGTTTGCCACCA
ATCAGTTCAGAAGCCCACTGGTTTAGCAATATGTTGCATTATAGGTTCATGAAGAAGATCCTGG
AAATGTTGTCGAAGTAATTTCAGGCAGCAAACAATATATGAGCAATCCTTCTGGATGTAAGGCT
TTAGCCGCATCATTATCAT
Transcript length: 630
Transcript exons: 1097953-1098052,1098143-1098204,1098650-1099117
CAATAAAAGCAAGAGATGGAAAACATGAACTGGGTCAAAAATGCTCGAGAACAGTTTGCCACCA
ATCAGTTCAGAAGCCCATCTATTCTCCATGCTATCTATTTTCGAGGAAATGAGTGGAGCATCAA
GAAGTTGTAAGAGAACGTTGAACAGCATGTCATCCTCCTCCATATATAACTGCAGAAAGCACAG
AGCATTGTCTGTAGATGATTTGAAGCCAAAAATCTTATCTAAGAAACATCTCTGAAACCAGTCT
GAAATTTCTGATAAGGCAAAACAGTCACAATGATCACTGCAGTCTAGAACTTTGTGACCAAGCA
TTTGATCGTCTCTCTTGCATGAACATTGCAGTGCACTGTCATTGCCATTGTGAGCCAAACATAT
GCAAAAGCTAAGAAACAAATACATAGCCTGTCTTTGTAAGTGCCTAGTGGATTTATCATGAGTC
TCACCCAGACCTACAGTGCTCAACAAAAATGGGGATCCTTCCAAACAGTTTTCTGGTTTAGCAA
TATGTTGCATTATAGGTTCATGAAGAAGATCCTGGAAATGTTGTCGAAGTAATTTCAGGCAGCA
AACAATATATGAGCAATCCTTCTGGATGTAAGGCTTTAGCCGCATCATTATCAT
						
					

						Genomic sequence
						
							CAATAAAAGCAAGAGATGGAAAACATGAACTGGGTCAAAAATGCTCGAGAACAGTTTGCCACCA
ATCAGTTCAGAAGCCCATCTATTCTCCATGCTATCTCTGCAAGTTCAGAAAAAAAAAGAGCATA
ACTTTTAACTACACCCAGATCTGGATAACTTTCTAAGACAAACTGCTTTACTCTTTGCTTACAT
TTTCGAGGAAATGAGTGGAGCATCAAGAAGTTGTAAGAGAACGTTGAACAGCATGTCATCCTAA
AGTATAAAGGAACAGATCAGTATTATGTTAACACTTAACACTAGGAAAATTAACAAACTTAGCT
GACAAATAACTTAAGCATCTAGATGAATTGGTTTGGAAAAACAGAAAGTGCAGAGAAGACAAAT
ACAACTGGAATAAAAGCATTAGCACCTCTCTGTAATAACTAACATGCCTTTTCACTGGGGCTTA
TGCCAAACATAACAGGCAACTCTATAGTAGTGTAGAGTAATATAAATGTATGAGAAATATCCTA
CTGTAAGGAAACAAATTATGTCCACAACAACCCACTTCCGAAGACAACTACAGCATACTTGCAA
CTACTGCCAAATCCAAGTTACCAAAAACTACTTAAACAAAACCAACAAGATGAAACATATTTTC
TACCTTGAACATTGATCAAGGTTAATTAGCTACCAGGCAATTGTAACAGATGCATACCTCCTCC
ATATATAACTGCAGAAAGCACAGAGCATTGTCTGTAGATGATTTGAAGCCAAAAATCTTATCTA
AGAAACATCTCTGAAACCAGTCTGAAATTTCTGATAAGGCAAAACAGTCACAATGATCACTGCA
GTCTAGAACTTTGTGACCAAGCATTTGATCGTCTCTCTTGCATGAACATTGCAGTGCACTGTCA
TTGCCATTGTGAGCCAAACATATGCAAAAGCTAAGAAACAAATACATAGCCTGTCTTTGTAAGT
GCCTAGTGGATTTATCATGAGTCTCACCCAGACCTACAGTGCTCAACAAAAATGGGGATCCTTC
CAAACAGTTTTCTGGTTTAGCAATATGTTGCATTATAGGTTCATGAAGAAGATCCTGGAAATGT
TGTCGAAGTAATTTCAGGCAGCAAACAATATATGAGCAATCCTTCTGGATGTAAGGCTTTAGCC
GCATCATTATCAT
						
					

			
		

Sequences
Splice junction sequence	CATGAAGAAGATCCTGGAAATGTTGTCGAAGTAATTTCAGGCAGCAAACAATATATGAGCAATC CTTCTGGATGTAAGGCTTTAGCCGCATCATTATCATcaataaaagcaagagatggaaaacatga actgggtcaaaaatgctcgagaacagtttgccaccaatcagttcagaagcccatctattctcca tgctatct
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 211 Transcript exons: 1097953-1098033,1098988-1099117 CAATAAAAGCAAGAGATGGAAAACATGAACTGGGTCAAAAATGCTCGAGAACAGTTTGCCACCA ATCAGTTCAGAAGCCCACTGGTTTAGCAATATGTTGCATTATAGGTTCATGAAGAAGATCCTGG AAATGTTGTCGAAGTAATTTCAGGCAGCAAACAATATATGAGCAATCCTTCTGGATGTAAGGCT TTAGCCGCATCATTATCAT Transcript length: 630 Transcript exons: 1097953-1098052,1098143-1098204,1098650-1099117 CAATAAAAGCAAGAGATGGAAAACATGAACTGGGTCAAAAATGCTCGAGAACAGTTTGCCACCA ATCAGTTCAGAAGCCCATCTATTCTCCATGCTATCTATTTTCGAGGAAATGAGTGGAGCATCAA GAAGTTGTAAGAGAACGTTGAACAGCATGTCATCCTCCTCCATATATAACTGCAGAAAGCACAG AGCATTGTCTGTAGATGATTTGAAGCCAAAAATCTTATCTAAGAAACATCTCTGAAACCAGTCT GAAATTTCTGATAAGGCAAAACAGTCACAATGATCACTGCAGTCTAGAACTTTGTGACCAAGCA TTTGATCGTCTCTCTTGCATGAACATTGCAGTGCACTGTCATTGCCATTGTGAGCCAAACATAT GCAAAAGCTAAGAAACAAATACATAGCCTGTCTTTGTAAGTGCCTAGTGGATTTATCATGAGTC TCACCCAGACCTACAGTGCTCAACAAAAATGGGGATCCTTCCAAACAGTTTTCTGGTTTAGCAA TATGTTGCATTATAGGTTCATGAAGAAGATCCTGGAAATGTTGTCGAAGTAATTTCAGGCAGCA AACAATATATGAGCAATCCTTCTGGATGTAAGGCTTTAGCCGCATCATTATCAT
Genomic sequence	CAATAAAAGCAAGAGATGGAAAACATGAACTGGGTCAAAAATGCTCGAGAACAGTTTGCCACCA ATCAGTTCAGAAGCCCATCTATTCTCCATGCTATCTCTGCAAGTTCAGAAAAAAAAAGAGCATA ACTTTTAACTACACCCAGATCTGGATAACTTTCTAAGACAAACTGCTTTACTCTTTGCTTACAT TTTCGAGGAAATGAGTGGAGCATCAAGAAGTTGTAAGAGAACGTTGAACAGCATGTCATCCTAA AGTATAAAGGAACAGATCAGTATTATGTTAACACTTAACACTAGGAAAATTAACAAACTTAGCT GACAAATAACTTAAGCATCTAGATGAATTGGTTTGGAAAAACAGAAAGTGCAGAGAAGACAAAT ACAACTGGAATAAAAGCATTAGCACCTCTCTGTAATAACTAACATGCCTTTTCACTGGGGCTTA TGCCAAACATAACAGGCAACTCTATAGTAGTGTAGAGTAATATAAATGTATGAGAAATATCCTA CTGTAAGGAAACAAATTATGTCCACAACAACCCACTTCCGAAGACAACTACAGCATACTTGCAA CTACTGCCAAATCCAAGTTACCAAAAACTACTTAAACAAAACCAACAAGATGAAACATATTTTC TACCTTGAACATTGATCAAGGTTAATTAGCTACCAGGCAATTGTAACAGATGCATACCTCCTCC ATATATAACTGCAGAAAGCACAGAGCATTGTCTGTAGATGATTTGAAGCCAAAAATCTTATCTA AGAAACATCTCTGAAACCAGTCTGAAATTTCTGATAAGGCAAAACAGTCACAATGATCACTGCA GTCTAGAACTTTGTGACCAAGCATTTGATCGTCTCTCTTGCATGAACATTGCAGTGCACTGTCA TTGCCATTGTGAGCCAAACATATGCAAAAGCTAAGAAACAAATACATAGCCTGTCTTTGTAAGT GCCTAGTGGATTTATCATGAGTCTCACCCAGACCTACAGTGCTCAACAAAAATGGGGATCCTTC CAAACAGTTTTCTGGTTTAGCAATATGTTGCATTATAGGTTCATGAAGAAGATCCTGGAAATGT TGTCGAAGTAATTTCAGGCAGCAAACAATATATGAGCAATCCTTCTGGATGTAAGGCTTTAGCC GCATCATTATCAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007000* osi_circ_016966 						
					
						PMCS
						0.394783755

Conservation Information
Conserved circRNAs	osi_circ_007000* osi_circ_016966
PMCS	0.394783755

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							1099073-1098155(+)
1099119-1097955(-)
						
						Potential amino acid sequence
						
							MSNPSGCKALAASLSSIKARDGKHELGQKCSRTVCHQSVQKPIYSPCYLFSRK*(+)
MIMMRLKPYIQKDCSYIVCCLKLLRQHFQDLLHEPIMQHIAKPENCLEGSPFLLSTVGLGETHD
KSTRHLQRQAMYLFLSFCICLAHNGNDSALQCSCKRDDQMLGHKVLDCSDHCDCFALSEISDWF
QRCFLDKIFGFKSSTDNALCFLQLYMEEDDMLFNVLLQLLDAPLISSKIDSMENRWASELIGGK
LFSSIFDPVHVFHLLLLLMIMMRLKPYIQKDCSYIVCCLKLLRQHFQDLLHEPIMQHIAKPENC
LEGSPFLLSTVGLGETHDKSTRHLQRQAMYLFLSFCICLAHNGNDSALQCSCKRDDQMLGHKVL
DCSDHCDCFALSEISDWFQRCFLDKIFGFKSSTDNALCFLQLYMEEDDMLFNVLLQLLDAPLIS
SKIDSMENRWASELIGGKLFSSIFDPVHVFHLLLLLMIMMRLKPYIQKDCSYIVCCLKLLRQHF
QDLLHEPIMQHIAKPENCLEGSPFLLSTVGLGETHDKSTRHLQRQAMYLFLSFCICLAHNGNDS
ALQCSCKRDDQMLGHKVLDCSDHCDCFALSEISDWFQRCFLDKIFGFKSSTDNALCFLQLYMEE
DDMLFNVLLQLLDAPLISSKIDSMENRWASELIGGKLFSSIFDPVHVFHLLLLLMIMMRLKPYI
QKDCSYIVCCLKLLRQHFQDLLHEPIMQHIAKPENCLEGSPFLLSTVGLGETHDKSTRHLQRQA
MYLFLSFCICLAHNGNDSALQCSCKRDDQMLGHKVLDCSDHCDCFALSEISDWFQRCFLDKIFG
FKSSTDNALCFLQLYMEEDDMLFNVLLQLLDAPLISSKIDSMENRWASELIGGKLFSSIFDPVH
VFHLLLLL(-)
						
						Sponge-miRNAs
						
							osa-miR530-3p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	1099073-1098155(+) 1099119-1097955(-)
Potential amino acid sequence	MSNPSGCKALAASLSSIKARDGKHELGQKCSRTVCHQSVQKPIYSPCYLFSRK*(+) MIMMRLKPYIQKDCSYIVCCLKLLRQHFQDLLHEPIMQHIAKPENCLEGSPFLLSTVGLGETHD KSTRHLQRQAMYLFLSFCICLAHNGNDSALQCSCKRDDQMLGHKVLDCSDHCDCFALSEISDWF QRCFLDKIFGFKSSTDNALCFLQLYMEEDDMLFNVLLQLLDAPLISSKIDSMENRWASELIGGK LFSSIFDPVHVFHLLLLLMIMMRLKPYIQKDCSYIVCCLKLLRQHFQDLLHEPIMQHIAKPENC LEGSPFLLSTVGLGETHDKSTRHLQRQAMYLFLSFCICLAHNGNDSALQCSCKRDDQMLGHKVL DCSDHCDCFALSEISDWFQRCFLDKIFGFKSSTDNALCFLQLYMEEDDMLFNVLLQLLDAPLIS SKIDSMENRWASELIGGKLFSSIFDPVHVFHLLLLLMIMMRLKPYIQKDCSYIVCCLKLLRQHF QDLLHEPIMQHIAKPENCLEGSPFLLSTVGLGETHDKSTRHLQRQAMYLFLSFCICLAHNGNDS ALQCSCKRDDQMLGHKVLDCSDHCDCFALSEISDWFQRCFLDKIFGFKSSTDNALCFLQLYMEE DDMLFNVLLQLLDAPLISSKIDSMENRWASELIGGKLFSSIFDPVHVFHLLLLLMIMMRLKPYI QKDCSYIVCCLKLLRQHFQDLLHEPIMQHIAKPENCLEGSPFLLSTVGLGETHDKSTRHLQRQA MYLFLSFCICLAHNGNDSALQCSCKRDDQMLGHKVLDCSDHCDCFALSEISDWFQRCFLDKIFG FKSSTDNALCFLQLYMEEDDMLFNVLLQLLDAPLISSKIDSMENRWASELIGGKLFSSIFDPVH VFHLLLLL(-)
Sponge-miRNAs	osa-miR530-3p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os07g0120700_circ_g.1

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