Detail information of AT2G05710_circ_g.3


General Information
CircRNA Name AT2G05710_circ_g.3
ID in PlantcircBase ath_circ_012889
Alias 2:2142146-2142399
Organism Arabidpsis thaliana
Position chr2: 2142146-2142399  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G05710
Parent gene annotation Aconitate hydratase 3, mitochondrial
Parent gene strand +
Alternative splicing AT2G05710_circ_g.2
Support reads 1/1
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05710.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTCAGGACTTTACGGGAGTCCCAGCTGTTGTTGACCTTGCTTGTATGCGTGATGCGATGAAT
AAGCTGGGAAGTGATTCCAACAAAATCAATCCCTTGataaacttccttactctattaggattct
gcttgaatctgcgattcgtaattgtgataactttcaagttactaaggaagatgttgagaagatt
attgactg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAAACTTCCTTACTCTATTAGGATTCTGCTTGAATCTGCGATTCGTAATTGTGATAACTTTCA
AGTTACTAAGGAAGATGTTGAGAAGATTATTGACTGGGAAAAGACATCTCCTAAACAAGTAGAG
ATTCCTTTTAAACCAGCTCGTGTTCTTCTTCAGGACTTTACGGGAGTCCCAGCTGTTGTTGACC
TTGCTTGTATGCGTGATGCGATGAATAAGCTGGGAAGTGATTCCAACAAAATCAATCCCTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.438858504
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020