Plant Circular RNA Database

Detail information of BGIOSGA023352_circ_ig.3

			
						 General Information
					
						CircRNA Name
						BGIOSGA023352_circ_ig.3
					
						ID in PlantcircBase
						osi_circ_016461
					
						Alias
						Chr06:26789805_26789995(MH63RS2), Chr06:26789805_26789995(MH63RS2)
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr6: 27449745-27449932  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						CIRI2, CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							BGIOSGA023352_circ_ig.1 BGIOSGA023352_circ_ig.2 						
					
						Support reads
						NA
					
						Tissues
						root, leaf, panicle
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-CA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	BGIOSGA023352_circ_ig.3
ID in PlantcircBase	osi_circ_016461
Alias	Chr06:26789805_26789995(MH63RS2), Chr06:26789805_26789995(MH63RS2)
Organism	Oryza sativa ssp. indica
Position	chr6: 27449745-27449932 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	ig-circRNA
Identification method	CIRI2, CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	BGIOSGA023352_circ_ig.1 BGIOSGA023352_circ_ig.2
Support reads	NA
Tissues	root, leaf, panicle
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-CA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							AGCCCCGCCGGCCCACTACTCAACTTGGAACGGGCGAGCCATCTGTAGCAATGCCGACCCAGGC
CCGCAGCCCGTACCGCAACGTCCACACCACccgttggaagcgggcagtattcgctgctctgtga
aaccagcctcacgccatgcctgccactctaggaaccgtggggccccagagctttcgcaca

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							CCGTTGGAAGCGGGCAGTATTCGCTGCTCTGTGAAACCAGCCTCACGCCATGCCTGCCACTCTA
GGAACCGTGGGGCCCCAGAGCTTTCGCACAAGCCCCGCCGGCCCACTACTCAACTTGGAACGGG
CGAGCCATCTGTAGCAATGCCGACCCAGGCCCGCAGCCCGTACCGCAACGTCCACACCAC

Sequences
Splice junction sequence	AGCCCCGCCGGCCCACTACTCAACTTGGAACGGGCGAGCCATCTGTAGCAATGCCGACCCAGGC CCGCAGCCCGTACCGCAACGTCCACACCACccgttggaagcgggcagtattcgctgctctgtga aaccagcctcacgccatgcctgccactctaggaaccgtggggccccagagctttcgcaca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCGTTGGAAGCGGGCAGTATTCGCTGCTCTGTGAAACCAGCCTCACGCCATGCCTGCCACTCTA GGAACCGTGGGGCCCCAGAGCTTTCGCACAAGCCCCGCCGGCCCACTACTCAACTTGGAACGGG CGAGCCATCTGTAGCAATGCCGACCCAGGCCCGCAGCCCGTACCGCAACGTCCACACCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osa_circ_031584 osa_circ_031581 osa_circ_031583 osa_circ_031579 
osa_circ_031585 osa_circ_031580 osa_circ_031597 osa_circ_031588 
osa_circ_031592 osa_circ_031595 osa_circ_031593 osa_circ_031589 
osa_circ_031587 osa_circ_031572 osa_circ_031569 osa_circ_031602 
osa_circ_031601 osa_circ_031603 osa_circ_031566 osa_circ_031607 
osa_circ_031574 osa_circ_031608 osa_circ_031610 osa_circ_031609 
osa_circ_031611 osa_circ_031562 osa_circ_031604 osa_circ_031558 
osa_circ_031573 osa_circ_031614 osa_circ_031594 osa_circ_031605 
osa_circ_031606 osa_circ_031578 osa_circ_031598 osa_circ_042390 
osa_circ_031620 osa_circ_031621 osa_circ_031568 osa_circ_031629 
osa_circ_031624 osa_circ_031565 osa_circ_031625 osa_circ_031623 
osa_circ_031552 osa_circ_031626 osa_circ_031520 osa_circ_031514 
osa_circ_031537 osa_circ_031545 osa_circ_007423 osa_circ_031632 
osa_circ_031556 						
					
						PMCS

Conservation Information
Conserved circRNAs	osa_circ_031584 osa_circ_031581 osa_circ_031583 osa_circ_031579 osa_circ_031585 osa_circ_031580 osa_circ_031597 osa_circ_031588 osa_circ_031592 osa_circ_031595 osa_circ_031593 osa_circ_031589 osa_circ_031587 osa_circ_031572 osa_circ_031569 osa_circ_031602 osa_circ_031601 osa_circ_031603 osa_circ_031566 osa_circ_031607 osa_circ_031574 osa_circ_031608 osa_circ_031610 osa_circ_031609 osa_circ_031611 osa_circ_031562 osa_circ_031604 osa_circ_031558 osa_circ_031573 osa_circ_031614 osa_circ_031594 osa_circ_031605 osa_circ_031606 osa_circ_031578 osa_circ_031598 osa_circ_042390 osa_circ_031620 osa_circ_031621 osa_circ_031568 osa_circ_031629 osa_circ_031624 osa_circ_031565 osa_circ_031625 osa_circ_031623 osa_circ_031552 osa_circ_031626 osa_circ_031520 osa_circ_031514 osa_circ_031537 osa_circ_031545 osa_circ_007423 osa_circ_031632 osa_circ_031556
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhou et al., 2021

circRNA

Detail information of BGIOSGA023352_circ_ig.3

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