Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G21270_circ_g.1 |
ID in PlantcircBase | ath_circ_003737 |
Alias | AT1G21270_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 7445903-7446073 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI2 |
Parent gene | AT1G21270 |
Parent gene annotation |
Wall-associated receptor kinase 2 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 2 |
Tissues | aerial, whole_plant, leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G21270.1:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.478438015 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
7445909-7446070(+) 7445947-7445905(-) |
Potential amino acid sequence |
MNVLVVDITVRSIVPVKTRRGASTVTAHLVTAKIPLIAVLVKSGLNTLDGLKFFLTSMNVLVVD ITVRSIVPVKTRRGASTVTAHLVTAKIPLIAVLVKSGLNTLDGLKFFLTSMNVLVVDITVRSIV PVKTRRGASTVTAHLVTAKIPLIAVLVKSGLNTLDGLKFFLTSMNVLVVDITVRSIVPVKTRRG ASTVTAHLVTAKIPLIAVLVKSGLNTLDGLKFFL(+) MLRTVMSTTNTFIDVKKNLSPSKVFRPDFTSTAIKGIFAVTRWAVTVEAPLRVFTGTMLRTVMS TTNTFIDVKKNLSPSKVFRPDFTSTAIKGIFAVTRWAVTVEAPLRVFTGTMLRTVMSTTNTFID VKKNLSPSKVFRPDFTSTAIKGIFAVTRWAVTVEAPLRVFTGTMLRTVMSTTNTFID(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
---|---|
References | Chu et al., 2017;Zhang et al., 2019 |