Detail information of AT2G04690_circ_g.1


General Information
CircRNA Name AT2G04690_circ_g.1
ID in PlantcircBase ath_circ_012806
Alias 2:1645473-1646031
Organism Arabidpsis thaliana
Position chr2: 1645473-1646031  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G04690
Parent gene annotation Pyridoxamine 5'-phosphate oxidase family protein
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04690.2:3
AT2G04690.1:3
AT2G04690.4:3
AT2G04690.6:3
AT2G04690.5:2
AT2G04690.3:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCCGCTTCTTTAAACTCGAGATCATCGATATATTTCTCATCAATTGGTATGGTGGAGCTAA
ACCTATCACTGTAGATGAATACCTTCATGCCAAGTCgaatgttgtatcgtttagtgatggttta
cccgagaaaggtaacggtataccttacttttacttaacaacacttgatccaactgcaagaaacg
cacttaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAATGTTGTATCGTTTAGTGATGGTTTACCCGAGAAAGGTAACGGTATACCTTACTTTTACTTA
ACAACACTTGATCCAACTGCAAGAAACGCACTTAAAGACCAGAGAGCTTCACTTGCAATTAGTG
AATCTCCTCTTGGAACTTGTACAAGAGATCCAATGAATCCTACTTGCTCTAAACTAACCCTTAC
CGGGAAGGTAAAAGAGTTTTTTCTTATTGACACGACAAAGAAACTTACTGTAAAATGCTTTGGT
CTTTATCTTATTATAATGTTTCAGTTGCTGATATTGGAAGGAGGATCTGAGGAAGCAGAAGTAG
CCAAAAAGGCTTTATTCACAAAGCATCCAGAGATGATGGGTGATTAATTGTTTCACTCATCTCT
TAAGATACAGATTCATGATAGATTTGTATTATCATGTGATGGTTTTATCATTTGCAGATTGGCC
TAAGGATCATGATTTCCGCTTCTTTAAACTCGAGATCATCGATATATTTCTCATCAATTGGTAT
GGTGGAGCTAAACCTATCACTGTAGATGAATACCTTCATGCCAAGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.173761271
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020