Plant Circular RNA Database

Detail information of Os02g0513000_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0513000_circ_g.1
					
						ID in PlantcircBase
						osa_circ_014763
					
						Alias
						Os_ciR2867
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 18447001-18449232  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os02g0513000						
					
						Parent gene annotation
						
							Similar to Receptor protein kinase-like protein. (Os02t0513000-0
1)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0513000_circ_g.2 Os02g0513000_circ_g.3 						
					
						Support reads
						4/2
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0513000-01:3

General Information
CircRNA Name	Os02g0513000_circ_g.1
ID in PlantcircBase	osa_circ_014763
Alias	Os_ciR2867
Organism	Oryza sativa
Position	chr2: 18447001-18449232 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os02g0513000
Parent gene annotation	Similar to Receptor protein kinase-like protein. (Os02t0513000-0 1)
Parent gene strand	+
Alternative splicing	Os02g0513000_circ_g.2 Os02g0513000_circ_g.3
Support reads	4/2
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0513000-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGATGTATATAGCTTTGGAGTTGTGTTGCTTGAGTTGATTACTGGTCGTCGGGCGATCGACAGC
ACTAGGCCACATGGGGAGCAAAATCTTGTCTCATGGgggctgagaagacgagggtgaagagcaa
tgcaatactaagggaaccttctgcgcccaaggatgccaatgggaatgtaatatcagcacagact
ttcacctt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 785
Transcript exons: 18447001-18447203,18447815-18448004,18448841-18449232
GGGCTGAGAAGACGAGGGTGAAGAGCAATGCAATACTAAGGGAACCTTCTGCGCCCAAGGATGC
CAATGGGAATGTAATATCAGCACAGACTTTCACCTTCCGAGAACTCGCGACCGCCACCAGGAAT
TTCAGGCCAGAGTGCTTCCTGGGCGAAGGAGGCTTTGGGCGCGTTTATAAGGGCCGCCTCGAGA
GCACTGGCCAGGTTGTGGCTATAAAGCAGCTTAATAGAGATGGGCTTCAAGGAAACAGAGAATT
TCTAGTGGAAGTTCTAATGCTCAGTTTGTTACATCATCAAAATCTTGTTAATCTGATTGGCTAT
TGTGCTGACGGAGATCAACGTCTTCTTGTTTATGAATACATGCACTTTGGATCATTGGAAGATC
ATTTGCATGATCTACCTCCTGATAAGGAAGCATTGGATTGGAACACAAGGATGAAAATTGCGGC
TGGTGCTGCTAAGGGACTAGAGTACCTTCATGACAAAGCAAATCCACCAGTTATTTATAGAGAC
TTCAAGTCATCAAACATTCTCTTAGATGAGAGTTTCCATCCAAAGCTGTCTGACTTTGGTCTTG
CAAAGTTGGGTCCTGTTGGTGACAAATCTCATGTCTCTACTCGTGTGATGGGAACATATGGATA
TTGTGCTCCTGAGTATGCTATGACAGGACAGTTGACAGTTAAGTCTGATGTATATAGCTTTGGA
GTTGTGTTGCTTGAGTTGATTACTGGTCGTCGGGCGATCGACAGCACTAGGCCACATGGGGAGC
AAAATCTTGTCTCATGG
						
					

						Genomic sequence
						
							GGGCTGAGAAGACGAGGGTGAAGAGCAATGCAATACTAAGGGAACCTTCTGCGCCCAAGGATGC
CAATGGGAATGTAATATCAGCACAGACTTTCACCTTCCGAGAACTCGCGACCGCCACCAGGAAT
TTCAGGCCAGAGTGCTTCCTGGGCGAAGGAGGCTTTGGGCGCGTTTATAAGGGCCGCCTCGAGA
GCACTGGCCAGGTAACTTATTTTGGCAAATGGGTATATGCTTCATTCTTGCATTCGCCTGTGGA
GAGCTGAACAACCGGAAAATTGCACTGTTGTAAAATCTTTACTGTTCACTTTTGTTTGTCTAAG
ATCTACGTTCTGAACTGTTTACAGGAATGAGAAATGACCATGTTGAGCAACTGTTTATTTCATC
TTGTTTGTTTATGCATTATAATACTATGCTGCTCCCTCTGGTCGTAATACATGTCATTTTGGCC
TGGGCCGCCTTTTTTCTTTTTAAATATATTTGTCAAACCCATTAAATTATAGGACTATGCAAGT
ACGTTGAAATGCAAATCTTCTCATATGATTTTCTTTATCCAGTTTAATTATTCAGAAATATTAC
TATACCCAGAAGTTTTGAAACTTTGACATGATGCTTGTCCAAAATACAAGTATTTCTGACCGGA
GGAAGTAGTAATAACTAGTAAGTGCAATTTTAGGCAACAAGGATCTAGTGTTGTATGTTCAGTG
TGTTGTATTGAAAAATTAAGAGCAATATGATTGAAGCACCAAAACTTCTTCTAAATTAAAATTA
GTTTAAAAGAAGTATGATGATTGAAGTCCCTTTTTCGTCATTGCAGGTTGTGGCTATAAAGCAG
CTTAATAGAGATGGGCTTCAAGGAAACAGAGAATTTCTAGTGGAAGTTCTAATGCTCAGTTTGT
TACATCATCAAAATCTTGTTAATCTGATTGGCTATTGTGCTGACGGAGATCAACGTCTTCTTGT
TTATGAATACATGCACTTTGGATCATTGGAAGATCATTTGCATGGTACGAATTCTATGTTTATT
CCCTGTAGAGATACTGTTTTGCATATGACCACAACCTGTAAATTTTCTGTTAATGGTTTCTATG
TCTGTACCTGCAATACTGTCCTCTGTCACATGTTTCCTTAGGTACAGATTGTCCATCAGCGATT
CTATCCATGCTTTTCTATCTGTGCTCTTTATGTGGCAGAATTAGTGTCCATGATTATTGTTTTT
CAATATCGGCAAATGTTTATGTGGTGGTAGACTAGTATTTCATTACTTAGCCCTAAAAATGTCA
CCATTTGCATTAACCTGCTCCCTGTTGAAGTGTTGACATTTTGTCTCTTCCAAGGGTCTAAAAT
AGGCTTGTAAGAGTGGCAAATAGTTAATTTTTCCCTAAAATGGTGCATGACAGCATAATGTGAG
TACTATGTTTGTCATGTTTTACAGTTCGCTCGCATTTCTCATCTGTGTGTACTGTAATTTTCAG
CTGCAATTTTTAGATGTGTTTGGCTATTTGTTGTAAGTTAAATAAAAGTCATAAAACCTATGGA
GTTACTTATAAAGTTATGTGGAGTTGTTGGTCTGCATATACCAAAAAATTACTTATAAAGTTAT
GTGGTCTACTGAAAATGGTTCGTGATGTAAAAACCAATGAAATATTTTTAGTCAATGATCTATG
GAAGGTGTAAATATATTTTTTATGTCTTGTTACTTCTCAAGGTTCTCTTATGTTCAGAAATTGT
ACCCTTTAACTGTATTGTGTGAGTCTAATATGTGATTTTGAATTAAGTGTCGATATAAATATGT
ATGAATAATGACCGTACTAAACTTCAATAAATTGTTTATGTGGTATAGATCTACCTCCTGATAA
GGAAGCATTGGATTGGAACACAAGGATGAAAATTGCGGCTGGTGCTGCTAAGGGACTAGAGTAC
CTTCATGACAAAGCAAATCCACCAGTTATTTATAGAGACTTCAAGTCATCAAACATTCTCTTAG
ATGAGAGTTTCCATCCAAAGCTGTCTGACTTTGGTCTTGCAAAGTTGGGTCCTGTTGGTGACAA
ATCTCATGTCTCTACTCGTGTGATGGGAACATATGGATATTGTGCTCCTGAGTATGCTATGACA
GGACAGTTGACAGTTAAGTCTGATGTATATAGCTTTGGAGTTGTGTTGCTTGAGTTGATTACTG
GTCGTCGGGCGATCGACAGCACTAGGCCACATGGGGAGCAAAATCTTGTCTCATGG
						
					

			
		

Sequences
Splice junction sequence	TGATGTATATAGCTTTGGAGTTGTGTTGCTTGAGTTGATTACTGGTCGTCGGGCGATCGACAGC ACTAGGCCACATGGGGAGCAAAATCTTGTCTCATGGgggctgagaagacgagggtgaagagcaa tgcaatactaagggaaccttctgcgcccaaggatgccaatgggaatgtaatatcagcacagact ttcacctt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 785 Transcript exons: 18447001-18447203,18447815-18448004,18448841-18449232 GGGCTGAGAAGACGAGGGTGAAGAGCAATGCAATACTAAGGGAACCTTCTGCGCCCAAGGATGC CAATGGGAATGTAATATCAGCACAGACTTTCACCTTCCGAGAACTCGCGACCGCCACCAGGAAT TTCAGGCCAGAGTGCTTCCTGGGCGAAGGAGGCTTTGGGCGCGTTTATAAGGGCCGCCTCGAGA GCACTGGCCAGGTTGTGGCTATAAAGCAGCTTAATAGAGATGGGCTTCAAGGAAACAGAGAATT TCTAGTGGAAGTTCTAATGCTCAGTTTGTTACATCATCAAAATCTTGTTAATCTGATTGGCTAT TGTGCTGACGGAGATCAACGTCTTCTTGTTTATGAATACATGCACTTTGGATCATTGGAAGATC ATTTGCATGATCTACCTCCTGATAAGGAAGCATTGGATTGGAACACAAGGATGAAAATTGCGGC TGGTGCTGCTAAGGGACTAGAGTACCTTCATGACAAAGCAAATCCACCAGTTATTTATAGAGAC TTCAAGTCATCAAACATTCTCTTAGATGAGAGTTTCCATCCAAAGCTGTCTGACTTTGGTCTTG CAAAGTTGGGTCCTGTTGGTGACAAATCTCATGTCTCTACTCGTGTGATGGGAACATATGGATA TTGTGCTCCTGAGTATGCTATGACAGGACAGTTGACAGTTAAGTCTGATGTATATAGCTTTGGA GTTGTGTTGCTTGAGTTGATTACTGGTCGTCGGGCGATCGACAGCACTAGGCCACATGGGGAGC AAAATCTTGTCTCATGG
Genomic sequence	GGGCTGAGAAGACGAGGGTGAAGAGCAATGCAATACTAAGGGAACCTTCTGCGCCCAAGGATGC CAATGGGAATGTAATATCAGCACAGACTTTCACCTTCCGAGAACTCGCGACCGCCACCAGGAAT TTCAGGCCAGAGTGCTTCCTGGGCGAAGGAGGCTTTGGGCGCGTTTATAAGGGCCGCCTCGAGA GCACTGGCCAGGTAACTTATTTTGGCAAATGGGTATATGCTTCATTCTTGCATTCGCCTGTGGA GAGCTGAACAACCGGAAAATTGCACTGTTGTAAAATCTTTACTGTTCACTTTTGTTTGTCTAAG ATCTACGTTCTGAACTGTTTACAGGAATGAGAAATGACCATGTTGAGCAACTGTTTATTTCATC TTGTTTGTTTATGCATTATAATACTATGCTGCTCCCTCTGGTCGTAATACATGTCATTTTGGCC TGGGCCGCCTTTTTTCTTTTTAAATATATTTGTCAAACCCATTAAATTATAGGACTATGCAAGT ACGTTGAAATGCAAATCTTCTCATATGATTTTCTTTATCCAGTTTAATTATTCAGAAATATTAC TATACCCAGAAGTTTTGAAACTTTGACATGATGCTTGTCCAAAATACAAGTATTTCTGACCGGA GGAAGTAGTAATAACTAGTAAGTGCAATTTTAGGCAACAAGGATCTAGTGTTGTATGTTCAGTG TGTTGTATTGAAAAATTAAGAGCAATATGATTGAAGCACCAAAACTTCTTCTAAATTAAAATTA GTTTAAAAGAAGTATGATGATTGAAGTCCCTTTTTCGTCATTGCAGGTTGTGGCTATAAAGCAG CTTAATAGAGATGGGCTTCAAGGAAACAGAGAATTTCTAGTGGAAGTTCTAATGCTCAGTTTGT TACATCATCAAAATCTTGTTAATCTGATTGGCTATTGTGCTGACGGAGATCAACGTCTTCTTGT TTATGAATACATGCACTTTGGATCATTGGAAGATCATTTGCATGGTACGAATTCTATGTTTATT CCCTGTAGAGATACTGTTTTGCATATGACCACAACCTGTAAATTTTCTGTTAATGGTTTCTATG TCTGTACCTGCAATACTGTCCTCTGTCACATGTTTCCTTAGGTACAGATTGTCCATCAGCGATT CTATCCATGCTTTTCTATCTGTGCTCTTTATGTGGCAGAATTAGTGTCCATGATTATTGTTTTT CAATATCGGCAAATGTTTATGTGGTGGTAGACTAGTATTTCATTACTTAGCCCTAAAAATGTCA CCATTTGCATTAACCTGCTCCCTGTTGAAGTGTTGACATTTTGTCTCTTCCAAGGGTCTAAAAT AGGCTTGTAAGAGTGGCAAATAGTTAATTTTTCCCTAAAATGGTGCATGACAGCATAATGTGAG TACTATGTTTGTCATGTTTTACAGTTCGCTCGCATTTCTCATCTGTGTGTACTGTAATTTTCAG CTGCAATTTTTAGATGTGTTTGGCTATTTGTTGTAAGTTAAATAAAAGTCATAAAACCTATGGA GTTACTTATAAAGTTATGTGGAGTTGTTGGTCTGCATATACCAAAAAATTACTTATAAAGTTAT GTGGTCTACTGAAAATGGTTCGTGATGTAAAAACCAATGAAATATTTTTAGTCAATGATCTATG GAAGGTGTAAATATATTTTTTATGTCTTGTTACTTCTCAAGGTTCTCTTATGTTCAGAAATTGT ACCCTTTAACTGTATTGTGTGAGTCTAATATGTGATTTTGAATTAAGTGTCGATATAAATATGT ATGAATAATGACCGTACTAAACTTCAATAAATTGTTTATGTGGTATAGATCTACCTCCTGATAA GGAAGCATTGGATTGGAACACAAGGATGAAAATTGCGGCTGGTGCTGCTAAGGGACTAGAGTAC CTTCATGACAAAGCAAATCCACCAGTTATTTATAGAGACTTCAAGTCATCAAACATTCTCTTAG ATGAGAGTTTCCATCCAAAGCTGTCTGACTTTGGTCTTGCAAAGTTGGGTCCTGTTGGTGACAA ATCTCATGTCTCTACTCGTGTGATGGGAACATATGGATATTGTGCTCCTGAGTATGCTATGACA GGACAGTTGACAGTTAAGTCTGATGTATATAGCTTTGGAGTTGTGTTGCTTGAGTTGATTACTG GTCGTCGGGCGATCGACAGCACTAGGCCACATGGGGAGCAAAATCTTGTCTCATGG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.192464083

Conservation Information
Conserved circRNAs	NA
PMCS	0.192464083

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							18449230-18447018(+)
18447885-18447018(+)
						
						Potential amino acid sequence
						
							MGAEKTRVKSNAILREPSAPKDANGNVISAQTFTFRELATATRNFRPECFLGEGGFGRVYKGRL
ESTGQVVAIKQLNRDGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMHFGSLE
DHLHDLPPDKEALDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDESFHPKLSDFG
LAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVLLELITGRRAIDSTRPHG
EQNLVSWGLRRRG*(+)
MLSLLHHQNLVNLIGYCADGDQRLLVYEYMHFGSLEDHLHDLPPDKEALDWNTRMKIAAGAAKG
LEYLHDKANPPVIYRDFKSSNILLDESFHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEY
AMTGQLTVKSDVYSFGVVLLELITGRRAIDSTRPHGEQNLVSWGLRRRG*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	18449230-18447018(+) 18447885-18447018(+)
Potential amino acid sequence	MGAEKTRVKSNAILREPSAPKDANGNVISAQTFTFRELATATRNFRPECFLGEGGFGRVYKGRL ESTGQVVAIKQLNRDGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMHFGSLE DHLHDLPPDKEALDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDESFHPKLSDFG LAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVLLELITGRRAIDSTRPHG EQNLVSWGLRRRG(+) MLSLLHHQNLVNLIGYCADGDQRLLVYEYMHFGSLEDHLHDLPPDKEALDWNTRMKIAAGAAKG LEYLHDKANPPVIYRDFKSSNILLDESFHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEY AMTGQLTVKSDVYSFGVVLLELITGRRAIDSTRPHGEQNLVSWGLRRRG(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0513000_circ_g.1

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