Detail information of AAAA02043046.1_circ_ig.5


General Information
CircRNA Name AAAA02043046.1_circ_ig.5
ID in PlantcircBase osi_circ_001444
Alias NA
Organism Oryza sativa ssp. indica
Position chrAAAA02043046.1: 118-572  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method DCC
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AAAA02043046.1_circ_ig.1 AAAA02043046.1_circ_ig.2 AAAA02043046.1_circ_ig.3 AAAA02043046.1_circ_ig.4 AAAA02043046.1_circ_ig.6 AAAA02043046.1_circ_ig.7 AAAA02043046.1_circ_ig.8 AAAA02043046.1_circ_ig.9 AAAA02043046.1_circ_ig.10 AAAA02043046.1_circ_ig.11 AAAA02043046.1_circ_ig.12 AAAA02043046.1_circ_ig.13 AAAA02043046.1_circ_ig.14 AAAA02043046.1_circ_ig.15 AAAA02043046.1_circ_ig.16 AAAA02043046.1_circ_ig.17 AAAA02043046.1_circ_ig.18 AAAA02043046.1_circ_ig.19
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GG-TG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGTAGGCGTAACGGTGGAGTTCTATGGTGGCGAACTTAATGGAGTAAGTTATTCTGATCCTG
CTACTGTAAAAAAATATGCGAGGCGTTCCCAATTAGggatcagggatactttcagcaagaaata
tatcgaagagttagtgatgggttagccgaaaatctcagtttatcagaagcttggtctaaaattc
ccgaaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATCAGGGATACTTTCAGCAAGAAATATATCGAAGAGTTAGTGATGGGTTAGCCGAAAATCTC
AGTTTATCAGAAGCTTGGTCTAAAATTCCCGAAAAATTAGCCTTTTATGATTATATTGGTAATA
ATCCGGCAAAGGGGGGATTATTCAGAGCAGGCTCAATGGACAATGGGGATGGAATAGCTGTTGG
ATGGTTAGGACATCCTATCTTTAGAGATAAAGAAGGGCGCGAACTTTTTGTACGCCGTATGCCT
ACTTTTTTTGAAACATTTCCGGTTGTTTTGGTAGATGAAGAGGGAATTGTGAGAGCGGACGTTC
CTTTTAGAAGAGCAGAATCCAAATATAGTGTTGAACAAGTAGGCGTAACGGTGGAGTTCTATGG
TGGCGAACTTAATGGAGTAAGTTATTCTGATCCTGCTACTGTAAAAAAATATGCGAGGCGTTCC
CAATTAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019