Plant Circular RNA Database

Detail information of Os07g0520900_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os07g0520900_circ_g.1
					
						ID in PlantcircBase
						osa_circ_034073
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 20117846-20120680  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0520900						
					
						Parent gene annotation
						
							Similar to galactolipase/ phospholipase. (Os07t0520900-01);Simil
ar to predicted protein. (Os07t0520900-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0520900_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0520900-01:7
Os07t0520900-02:8

General Information
CircRNA Name	Os07g0520900_circ_g.1
ID in PlantcircBase	osa_circ_034073
Alias	NA
Organism	Oryza sativa
Position	chr7: 20117846-20120680 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0520900
Parent gene annotation	Similar to galactolipase/ phospholipase. (Os07t0520900-01);Simil ar to predicted protein. (Os07t0520900-02)
Parent gene strand	-
Alternative splicing	Os07g0520900_circ_g.2
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0520900-01:7 Os07t0520900-02:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTACAGCTTCAATAGGCTTCATGATATCACACTTAATAAGTAGCATAGCTGATGAAATATCTGA
TCCCAGTGATGAAAGAGCAAGGCATGCTTGCTCAACctggattaaagcggaaatactgcatttc
tgggagcattggtatcagtgtatccaaagtttcttcaactctctctacagagcatgaactttct
attaaaac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGGATTAAAGCGGAAATACTGCATTTCTGGGAGCATTGGTATCAGTGTATCCAAAGTTTCTTC
AACTCTCTCTACAGAGCATGAACTTTCTATTAAAACTTGCCCTGTGTCCAAGTAGCGCCACCCA
CCTCTCCGACTCTAGATGCATAACACATGGAATAAATTTATATATATAAGCAATGTGATAGATG
TATAGCTCACAACGAGATCACTGGAAGTGTAAACTTAATGTACCATAGAAGTTAACTTTTCAAA
CTAAAAACAAAAATTATTCATCTTGGATCAGTCAGGTGTTTCTTCTAGTAATGTATGCCTTGAC
TTGTGGTTTCCAACAGATGAGGCTAATATAAGCTACAGATTATATGTAGTGTATCGAATTAATA
GATCCCATTCCCATATTATGTCACTTGCAAAACAAAAAAAAACTTTAATATATGAAATTGACTA
AAATTTTAGCCTCTAAAATTTACTATCCTGGAACGATATTGAACCTATGAAAGTTTCAGTTCCA
ATATACCGACATATTGTACATGTGTTCAACGTATTACAAAATTGGGAAAACAATATTTCTTTAA
AATGTGAGGAATTCAGTAAATAATTGGTTTTCCAGCACATGGATTGCCCATTGCTTGGAAGGCT
GCCCAACACTTAACAGGGGCGGAGACAGGAGGAGGCAAGCAGAGGCCTGGACTCCCCCCATGGC
TCCAAATTTTACACTAAATTTATTGTAGATTTAGCAAATTTTGAGAAAAAAAACTAACACTATT
GGCCCGATTCAACCATTTTTTTTTTTGCATTTCTGTCTCTGCCACTGATACTTAATAGTTGTAA
TGAATAATAGTGTTAACAAAAGAGTCGACAACTATGATGTATATTACCTTAGTTGGAACTGAAC
CACACCCTATTGAAACTAGACAATCTATTCTCGTATCAGGCCACAAAAGTTGTGCCTCTCTTAT
CGCAAAGATTGTGGGATTGTTGGCTACAATAGCTCCATCCTGCCAACGATTTACGTCTGAAGAG
AAAGGAAGAAAAAAAAAGGGCTATAAGAACTGCGGTGGATAACAAATCTTGAGGACTCAAACAA
ATAGAGGCCTACTGTTCTTGCACAAAACAATATCCACAACTAAGTTTAGGAATATCTACCATCA
GAGAAATCATCCAGATAATATGGAGCTGCAGAAGATGCTCTTATGGCTTCCCATATGCGATGCT
TGCAGCTACCCATGAAAGCACCACGTTTAATACCAACCGGTGCACCAGAAACAGCAGTTCCAAC
CGTGTTAATTGGTTTAATACCGACCGGGGCACCAGAAACGGGCGTTCCAGCTGAGCCAATTGAT
GGGCTTTCTGTCATGACTGATGATACTTCCACAGTGCCAGGTGGGTACTGGAACATGTTATGAG
GTTAACAGATGGCCCAATATTCAAGAAGAGAAAAAAAAACTTGTGAATCTGCACTCTTCTTCAG
TTTCCTGACTAATAAGCACAAGCATTGACATGGTCATGCACAGACTGTATATATGGTAAGAAAA
CAAACCTGGTAATTTCGGAATATATATGGTTGGGCAGGCATGACACTGACTAAAGTAGATACAG
CAAAAACCTTCGGAATGCCTTTTACAGCAGACTCTATAAGGAGGTCACCATCTTCATCAGCACA
CATTTCCTTTAGTAACCTCTCAAATTGATCTGCACTGTGCTGTAATTAAGACTTTGGTCACTAA
CTACATTGTGTCACATGAAAGACCACATCAATAACAAGTTATTATGTTATTTACCTTTGATCCA
TGTACAACCACCCTAAAACTCTGTGATGAACTTTTAAAAAGCTGATCAATCTTCTCCTTCCACG
TTGCAGCTTCATCCTTGGGGGCAGGTTCAGCAAAGACAAGTTTGCCTGGAGAAACCAACAGTTC
ACTTGGCAACACAATAAGAAAAATGTGGAAAGTAAGAGCCAAAAGACACTCACCAAGTTTTGTG
TATATTTCTTCACATTGATCCAGAGTCATCTGCTTGACTCCAAGAGCCATCGCAAGCATGCCAC
CTGTCGATGTACCACATATGAGGTCAAACATTTCATGTATGCGTTTCCCAGTCCCTTGCTCTAT
CTGTTTAAGAATTTGGACAGTCGCAAGGCCTTTCATGCCACCACCATCCATTGATAGAATGCGC
AGACCCTTCTTTGCAACTGGTCTTCCTCTTATTGCTCGACGCAAGTTCTCGTTCTCACCTAAAA
GGATTGAAGAGATATTCACAAACTAATCAACACATATAGTTATTGAATATTCAGGAAAATGGAT
CACATAAATTAAGATTCAGTACCAAAACAAGCATACCTAGAATTGCCAAAGCACGTGCAGCTGC
CTTGCTGACACGCTTCTCTTGTGAAAGAGTTAAGCGAATTAAAAGGTCGCGCAAACTTTCAGAG
TGCATGAGGGTGCGACGAGTCTCCAAGCAGAAAGCCAAATTGCCAACTGCAAATAGAGATAGAC
GTTGCACCTAGAAAATGGGAACAGATACAAGTGAGCTCACCGGTGGGTATCGAAACAACACATC
AACCAGAGTCTAAATCCAGATCATCTTGCCTCAGAGTTCTTGTGTGCACAAAGTGTTTTCAGTG
ACTTCAGAACGTCTTTCGTCAACATTTTTTGAGCAACATGATCAGAAACAAAAGTTAAGGTGAC
TACAACTTGCAATACTGATTCTAATTCTTCTTCATTAAATGATTTCAGTACAGCTTCAATAGGC
TTCATGATATCACACTTAATAAGTAGCATAGCTGATGAAATATCTGATCCCAGTGATGAAAGAG
CAAGGCATGCTTGCTCAAC
						
					

			
		

Sequences
Splice junction sequence	GTACAGCTTCAATAGGCTTCATGATATCACACTTAATAAGTAGCATAGCTGATGAAATATCTGA TCCCAGTGATGAAAGAGCAAGGCATGCTTGCTCAACctggattaaagcggaaatactgcatttc tgggagcattggtatcagtgtatccaaagtttcttcaactctctctacagagcatgaactttct attaaaac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGGATTAAAGCGGAAATACTGCATTTCTGGGAGCATTGGTATCAGTGTATCCAAAGTTTCTTC AACTCTCTCTACAGAGCATGAACTTTCTATTAAAACTTGCCCTGTGTCCAAGTAGCGCCACCCA CCTCTCCGACTCTAGATGCATAACACATGGAATAAATTTATATATATAAGCAATGTGATAGATG TATAGCTCACAACGAGATCACTGGAAGTGTAAACTTAATGTACCATAGAAGTTAACTTTTCAAA CTAAAAACAAAAATTATTCATCTTGGATCAGTCAGGTGTTTCTTCTAGTAATGTATGCCTTGAC TTGTGGTTTCCAACAGATGAGGCTAATATAAGCTACAGATTATATGTAGTGTATCGAATTAATA GATCCCATTCCCATATTATGTCACTTGCAAAACAAAAAAAAACTTTAATATATGAAATTGACTA AAATTTTAGCCTCTAAAATTTACTATCCTGGAACGATATTGAACCTATGAAAGTTTCAGTTCCA ATATACCGACATATTGTACATGTGTTCAACGTATTACAAAATTGGGAAAACAATATTTCTTTAA AATGTGAGGAATTCAGTAAATAATTGGTTTTCCAGCACATGGATTGCCCATTGCTTGGAAGGCT GCCCAACACTTAACAGGGGCGGAGACAGGAGGAGGCAAGCAGAGGCCTGGACTCCCCCCATGGC TCCAAATTTTACACTAAATTTATTGTAGATTTAGCAAATTTTGAGAAAAAAAACTAACACTATT GGCCCGATTCAACCATTTTTTTTTTTGCATTTCTGTCTCTGCCACTGATACTTAATAGTTGTAA TGAATAATAGTGTTAACAAAAGAGTCGACAACTATGATGTATATTACCTTAGTTGGAACTGAAC CACACCCTATTGAAACTAGACAATCTATTCTCGTATCAGGCCACAAAAGTTGTGCCTCTCTTAT CGCAAAGATTGTGGGATTGTTGGCTACAATAGCTCCATCCTGCCAACGATTTACGTCTGAAGAG AAAGGAAGAAAAAAAAAGGGCTATAAGAACTGCGGTGGATAACAAATCTTGAGGACTCAAACAA ATAGAGGCCTACTGTTCTTGCACAAAACAATATCCACAACTAAGTTTAGGAATATCTACCATCA GAGAAATCATCCAGATAATATGGAGCTGCAGAAGATGCTCTTATGGCTTCCCATATGCGATGCT TGCAGCTACCCATGAAAGCACCACGTTTAATACCAACCGGTGCACCAGAAACAGCAGTTCCAAC CGTGTTAATTGGTTTAATACCGACCGGGGCACCAGAAACGGGCGTTCCAGCTGAGCCAATTGAT GGGCTTTCTGTCATGACTGATGATACTTCCACAGTGCCAGGTGGGTACTGGAACATGTTATGAG GTTAACAGATGGCCCAATATTCAAGAAGAGAAAAAAAAACTTGTGAATCTGCACTCTTCTTCAG TTTCCTGACTAATAAGCACAAGCATTGACATGGTCATGCACAGACTGTATATATGGTAAGAAAA CAAACCTGGTAATTTCGGAATATATATGGTTGGGCAGGCATGACACTGACTAAAGTAGATACAG CAAAAACCTTCGGAATGCCTTTTACAGCAGACTCTATAAGGAGGTCACCATCTTCATCAGCACA CATTTCCTTTAGTAACCTCTCAAATTGATCTGCACTGTGCTGTAATTAAGACTTTGGTCACTAA CTACATTGTGTCACATGAAAGACCACATCAATAACAAGTTATTATGTTATTTACCTTTGATCCA TGTACAACCACCCTAAAACTCTGTGATGAACTTTTAAAAAGCTGATCAATCTTCTCCTTCCACG TTGCAGCTTCATCCTTGGGGGCAGGTTCAGCAAAGACAAGTTTGCCTGGAGAAACCAACAGTTC ACTTGGCAACACAATAAGAAAAATGTGGAAAGTAAGAGCCAAAAGACACTCACCAAGTTTTGTG TATATTTCTTCACATTGATCCAGAGTCATCTGCTTGACTCCAAGAGCCATCGCAAGCATGCCAC CTGTCGATGTACCACATATGAGGTCAAACATTTCATGTATGCGTTTCCCAGTCCCTTGCTCTAT CTGTTTAAGAATTTGGACAGTCGCAAGGCCTTTCATGCCACCACCATCCATTGATAGAATGCGC AGACCCTTCTTTGCAACTGGTCTTCCTCTTATTGCTCGACGCAAGTTCTCGTTCTCACCTAAAA GGATTGAAGAGATATTCACAAACTAATCAACACATATAGTTATTGAATATTCAGGAAAATGGAT CACATAAATTAAGATTCAGTACCAAAACAAGCATACCTAGAATTGCCAAAGCACGTGCAGCTGC CTTGCTGACACGCTTCTCTTGTGAAAGAGTTAAGCGAATTAAAAGGTCGCGCAAACTTTCAGAG TGCATGAGGGTGCGACGAGTCTCCAAGCAGAAAGCCAAATTGCCAACTGCAAATAGAGATAGAC GTTGCACCTAGAAAATGGGAACAGATACAAGTGAGCTCACCGGTGGGTATCGAAACAACACATC AACCAGAGTCTAAATCCAGATCATCTTGCCTCAGAGTTCTTGTGTGCACAAAGTGTTTTCAGTG ACTTCAGAACGTCTTTCGTCAACATTTTTTGAGCAACATGATCAGAAACAAAAGTTAAGGTGAC TACAACTTGCAATACTGATTCTAATTCTTCTTCATTAAATGATTTCAGTACAGCTTCAATAGGC TTCATGATATCACACTTAATAAGTAGCATAGCTGATGAAATATCTGATCCCAGTGATGAAAGAG CAAGGCATGCTTGCTCAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.226454483

Conservation Information
Conserved circRNAs	NA
PMCS	0.226454483

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							20120633-20117961(+)
20120602-20117927(+)
20120628-20120678(-)
						
						Potential amino acid sequence
						
							MKYLIPVMKEQGMLAQPGLKRKYCISGSIGISVSKVSSTLSTEHELSIKTCPVSK*(+)
MISHLISSIADEISDPSDERARHACSTWIKAEILHFWEHWYQCIQSFFNSLYRA*(+)
MLLIKCDIMKPIEAVLKSFNEEELESVLQVVVTLTFVSDHVAQKMLTKDVLKSLKTLCAHKNSE
VQRLSLFAVGNLAFCLETRRTLMHSESLRDLLIRLTLSQEKRVSKAAARALAILGENENLRRAI
RGRPVAKKGLRILSMDGGGMKGLATVQILKQIEQGTGKRIHEMFDLICGTSTGGMLAMALGVKQ
MTLDQCEEIYTKLGKLVFAEPAPKDEAATWKEKIDQLFKSSSQSFRVVVHGSKHSADQFERLLK
EMCADEDGDLLIESAVKGIPKVFAVSTLVSVMPAQPYIFRNYQYPPGTVEVSSVMTESPSIGSA
GTPVSGAPVGIKPINTVGTAVSGAPVGIKRGAFMGSCKHRIWEAIRASSAAPYYLDDFSDDVNR
WQDGAIVANNPTIFAIREAQLLWPDTRIDCLVSIGCGSVPTKSRRGGWRYLDTGQVLIESSCSV
ERVEETLDTLIPMLPEMQYFRFNPG*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	20120633-20117961(+) 20120602-20117927(+) 20120628-20120678(-)
Potential amino acid sequence	MKYLIPVMKEQGMLAQPGLKRKYCISGSIGISVSKVSSTLSTEHELSIKTCPVSK(+) MISHLISSIADEISDPSDERARHACSTWIKAEILHFWEHWYQCIQSFFNSLYRA(+) MLLIKCDIMKPIEAVLKSFNEEELESVLQVVVTLTFVSDHVAQKMLTKDVLKSLKTLCAHKNSE VQRLSLFAVGNLAFCLETRRTLMHSESLRDLLIRLTLSQEKRVSKAAARALAILGENENLRRAI RGRPVAKKGLRILSMDGGGMKGLATVQILKQIEQGTGKRIHEMFDLICGTSTGGMLAMALGVKQ MTLDQCEEIYTKLGKLVFAEPAPKDEAATWKEKIDQLFKSSSQSFRVVVHGSKHSADQFERLLK EMCADEDGDLLIESAVKGIPKVFAVSTLVSVMPAQPYIFRNYQYPPGTVEVSSVMTESPSIGSA GTPVSGAPVGIKPINTVGTAVSGAPVGIKRGAFMGSCKHRIWEAIRASSAAPYYLDDFSDDVNR WQDGAIVANNPTIFAIREAQLLWPDTRIDCLVSIGCGSVPTKSRRGGWRYLDTGQVLIESSCSV ERVEETLDTLIPMLPEMQYFRFNPG*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0520900_circ_g.1

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