Detail information of BGIOSGA034990_circ_g.2


General Information
CircRNA Name BGIOSGA034990_circ_g.2
ID in PlantcircBase osi_circ_003056
Alias 11:4896770|4897312
Organism Oryza sativa ssp. indica
Position chr11: 4896770-4897312  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method find_circ
Parent gene BGIOSGA034990
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA034990_circ_ag.1 BGIOSGA034990_circ_g.1 BGIOSGA034990_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA034990-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTTTCTGCCTCAATCCATGGCAGGTGCAATTTCATCAATTGAAGTTGCAAAAGAGGGCAAAA
TTAAACAAATGAATTAAAAAGGGATGAAATGGCATTacaccacaatgccatttcttccatttat
tctcaatcaaatgaattttgccctgtttttcttgatgagctgaccaaaatacgtcacgctcgtt
ctctctct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACACCACAATGCCATTTCTTCCATTTATTCTCAATCAAATGAATTTTGCCCTGTTTTTCTTGAT
GAGCTGACCAAAATACGTCACGCTCGTTCTCTCTCTCTGTCTCGCTGGGCTGTGGCTGCCGTCA
GCAATGCGGCGCCATTACTGAGCTCTGGCCACCCCGCATCAGGAAGGATGGGACCAACGCCGTT
GTGCACCCACCGCACGCCACCGCACTCTCCCGATGAGGACAGCTGGCGGCAGAGCTCCATGAGG
ATATTCGCGCACGAGCATGATGAGGTTGGTGGCGTGCAATGGAGCTGGAGGAGGCCACTGCTGC
TTGAGGAGGCTGCGGTGGCGCTGAAGGAGGCCGCTGGTGCGAGAGCTTGGGGAGGACACCGGCA
TGGAAGCTGGAAAAGGCCGGTGGTACGGGCGGCGATGCAGGAGCTTGAGTTGTTCTCCTCTGTT
TCTGCCTCAATCCATGGCAGGTGCAATTTCATCAATTGAAGTTGCAAAAGAGGGCAAAATTAAA
CAAATGAATTAAAAAGGGATGAAATGGCATT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021