Detail information of BGIOSGA015820_circ_g.1


General Information
CircRNA Name BGIOSGA015820_circ_g.1
ID in PlantcircBase osi_circ_014329
Alias Chr04:1808199_1809693(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 1802055-1803549  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA015820
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA015820-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACACCACATGGGAACAATAAGCTGGATGCAGCTTTTCGTGAAGCTCAGATTTTAATTAAGGAA
AAGGGCAAAAAGTGCCCTGTCTTCCTATTCTTTTCGggattgtcaagagccgccttcagaatcc
aaccatgctatttcccatgggtcaaatacagattctaaggaagaaatgtcatcgggaagtgggt
atcgtagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATTGTCAAGAGCCGCCTTCAGAATCCAACCATGCTATTTCCCATGGGTCAAATACAGATTCT
AAGGAAGAAATGTCATCGGGAAGTGGGTATCGTAGGCAGCAGTCTTGCTTTTCTTCATCAACCT
GTTCTTGGAGAAGTTCTTCTGAAGTAGAATCAGTGTCAAGTACTCCAGACGGGTCAGGAGATGT
AGTTGGGAACATGAGCGTCAGAAGCAAAACCTTTGAGCGAAGGCCAGATCACATTGCTTCATAT
CCTTCTGCTAGTCCTGACATAAGAAGGTTGTATGCAGCAGAAGGTAAAGCTGGTTTTACCTTAG
ATTATCATTCAGAAGAACGCTGGTCCAGAAGATCCAATCAATCTACTGCCTTTCGAACCAGCAA
TGGTCAATCTATTGAACACCACAGTGAGGTATGGTTGTGGATCCCTTTGACTACACAATAAATT
TTGTCTATATATACAGTTTCTGTATTTGGCATGTCTATTAAACGATTAAAGACTGTATATGGGT
GTTTACTAATTTTAGTTTTATCATCAAAACAGATAGTTGACATACCTAGACAGGCCAATTCCAT
GGATGAGACTACTTCCTCTTCAAGTCAATGGAGTTTTGACAATTGGGGACCTTCACTGCCAAGA
GGGATGCAGTATGGTGATGAGATCCCTTCTCTGTCTAGTCAGAACTATGGTGCTAGAATCCCCT
CGCTTTCAAGTAGACAAAGTTATGGTGATGAGATTCCGTCACTATCTCGCAATTGTAACTACGC
GAGTAGACAAAGTTATGGTGATGAGATTCCATCGCTTTCTTCTCGCCATTGTAACTCGTTCTCA
AGTAGACAAAGTTATGGTGATGAGATTCCATCACTTTCTCGCCATTGTAACACACGCTCAAGTA
GACAAAATTACGGTGATGAGATTCCATTGCTGTCTAACTCTGACTATCAGTGCTACCAAGATAG
GATACCTTTGCATCATCGTCAATGGTGCCATGATGCTGAGGCACATCCACAGCTAAACTACGGG
CGAGGTGCTTCTCATGGCAATCGTTACTCAAGAGACAGTTTTGTCAGTAGTATTGCTACTAATC
AGAGGTTCAAGATGGGCACAGGCAAACATACTGTCACAAGATCTGATCATCATAGGACTATTAA
GAACGATAATGTATGCAAACATTCTGATGATACATTGGAGCAAGTTCGTGGTCCCCGTGCAAAC
AAATTGGAAAATGCAACAAGATCCAAGACACAGGAAGATATCAGAAGTCCTTTGGTCCGTAGGG
ATCAGTTTAACAGACCAGACTTTATAGTTGAGTATGAACAAGCCAAGTTCTTTATGATAAAGTC
ATATAGTGAAGATGATATTCATAAAGGTATCAAATACAATGTTTGGGCAAGTACACCACATGGG
AACAATAAGCTGGATGCAGCTTTTCGTGAAGCTCAGATTTTAATTAAGGAAAAGGGCAAAAAGT
GCCCTGTCTTCCTATTCTTTTCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021