Detail information of Os05g0558900_circ_g.4


General Information
CircRNA Name Os05g0558900_circ_g.4
ID in PlantcircBase osa_circ_028899
Alias NA
Organism Oryza sativa
Position chr5: 27803293-27806597  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os05g0558900
Parent gene annotation Similar to Frsb-prov protein. (Os05t0558900-01)
Parent gene strand +
Alternative splicing Os05g0558900_circ_g.2 Os05g0558900_circ_g.3 Os05g0558900_circ_g.5 Os05g0558900_circ_g.6 Os05g0558900_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0558900-01:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTTGTTTGTAGGAACCTGAATTCTTTCCGAAAAGACAATGCAAAATTGTTATGAGTGATGGA
AAGCAGATTGGCTACTTAGGAATTGTGCATGCCGAGgctctaccaccacaagagatcaactttg
tcccattaaagcaggtaaaataatttaccaaatttaaccaagccatatactgtgccgatcttgc
agattatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTCTACCACCACAAGAGATCAACTTTGTCCCATTAAAGCAGGTAAAATAATTTACCAAATTTA
ACCAAGCCATATACTGTGCCGATCTTGCAGATTATTTACAGAGCAATATAACAGTCTTGTTTTA
TTTGCTGAGGATTTATACTAATGTTTTATTTGTGTTCTCTTTATTGTATGTTTCAGGAGGAAAG
CTTCAGGGCTGATAAACTGATGGAATTCTATAAAGTAAGCAGCCATATCGTTTTTTAGTGCCCA
TGTAGCAATAACTAGTGCCAGACAAGTTTTGAAGTTTATAATTAATTACAGGCACTGAATTTTG
ATTCTATGATAAGTGTTCTATGTACATATTTATTTGGTTGCTAATGTTCTATGCTTTCTTTGTG
CAGTCAGACATGAAGTTGAAGAAGTTCCTGCATATAATTGAGAATTCGCCAGTATACCCAGTTA
TTTATGATAGCAACAGGTGAACTTATTGCATGCTCTGATTATTTGCACACCTTGTTTTTTTTTC
CTTAAATCCTTTATGATCTTAATCAGTTAGAGAGGACCTAGTGATCAGTGTGTAACCATTAGCT
CTTTTTGTTACATTTCTCAAATTCTCAATGTTACAACAAAAATCAACTAGAAAGGACCCATTGC
CAATATCTAATGGTGATGCTTCCACCAGGATATCAGTATTAAAAATATTTATTTGTTAATGAAA
TGGCCTATTTTCAGTCAGCAATGCGATCATTTCTGTGTAAACTTCAATAATTTTCAGGACCGTA
TTGTCTTTACCACCAATCATCAATGGTGCACATTCTGCTATCACTCTGAAGACAAGGAATGTGT
TTATTGAGTGTACCGCTACTGACCTTACAAAAGCAAAGATTGTTCTCAATACAATGGTAGGTGC
AATGTAACTCTCTCCCCTAGGTAGAAATTATCTCCTTCTGGATGAAGATCAAACTGTTGCATTT
ATGGTCTGGTTTTTATCTGTATAGGTCACAATGTTCTCTGAGTACTGCGAAAACAAGTTTGAAG
TGGAACCAGTTGAAGTTGTGTCACATGATGGAAGCAAAACCATTTACCCTGACCTTTCATGCTA
TAAAATGGAGGTCTCACTATCTGAGGTTGTTGGACCCATTGGCATCTCCCTAGATGAGACAAAG
GTATTTTCCAGACCTCATCTCTATGGTAGTTATTGAATAATAACTGAGAAATTGACATTTACCT
TATCGTATTTGAATTGACAATGTACTAACTGCCACATTTTTTAATCGTTCTGTCTGTAGTTTGA
GCTAAGTTAAATGGTATTCACTTTGGTTACCGCTTTTGCTTGGATACTCTGAAATTAGATTTGC
ATGCTTGTGCAAGTGAAATGACACAGTTGTGTGTGCAAAAATGCAGGTTATTTCCCTTCTGAAC
AAAATGCAGTTGCAAGCTGAAAGTTGTCCATCAAAAGGGGAACCACGTATTTCAGTTTCTGTCC
CTCCAACAAGAAGTGACATTCTGCATGCTCGTGATTTGGTGGAGGTAATACATAATTCTCTACC
ATAGCCTTTTCCATAGTTGCTAATCATTGTTTGGATAATTTTGTACTCAGTTTTCACTTTTGCT
GTGAAGGATGTTGCTATAGCTTATGGTTACAACAATGTGCCAAAATCAAAGCCAAAGTGTATGA
CAATAGGAGGAAGGCAACCATTAAACCGTTTCTCTGATAAACTTCGTGCTGAGGTACTTGAGTC
TCTTGTGATGTACCTCTGGTTTGGCATATATCTTTTCACCAACTGATATTTCTTTGATAAATGA
AATATGTGGGGCCAGGTTGCAAGAGCTGGTTATATGGAGGTGCTCACATTTACCTTGTGTTCAC
GTGAAGAAAACTTTGACATGTTAAATAGGACACAGGATGTAAATAAAGCAGTTATTATTGCGAA
TCCACGCACTTCTGAATTTGAGGTAACAAGAATTTGTTCTAGTCTTCTAGATGTTCAATGCTCT
TCCGCTATGATTTGTTGGATATTGAATTCAACTTGCAATTTATTATGTTCTTGGTTTCATATTT
TTTCTAAGAGGAGTGTAAATGTAAATTTATCATGGTCTAAATGTTCCATTGGTAAATATCCTCG
CCAGTTCCTTTGTTCCTACATTAGAAATTTTTACTTTTTCATACAAGCCAAGTTGTGAATTGAT
ACCCTGGCCAAGCTGTTAACAGATGAATCTACATGACATTTCAAATATTCTTTTGTGGTTAACA
TAAACAAATTTCAGATGTTACTACCTCCTTGCACAAATGTATGACGTTGGTTAGTTCAATTTTG
AGCTAACCAACGTCAAACAAAAAAAATATGGAGGGGGTACAACTTATCTCTTCACGTTTTCATT
TTTTTGTGTGCATTTTCTGCACTTAAGTGTGGCCTTTTGTACTTTATTGCCCTTCTCTATAGAG
AAAAGGAAAGAAATCTGCACTGTTCTACAATATATTTGTTTCTTATGTATGCTATATCTGCCAC
GATGAGATTTAAGAACATAACTGTGTTAAGCAAGCAGTACATGTAATAATTATTGTTTTCATTG
TGGTTTTGCAGGTGGTTCGAACCAGTCTGATGTCATGTTTATTGAAAACTTTGAAGCATAACAT
AGACCATCCAAGACCCATAAAGGTACTTTGTGAAAATAAGAATGAATACGCATATGCTTATTAT
TAGCTCACTGTCATTGAGGTGCTTTTTCTCACGCTTAATCATTACATGAATTGTAGCATTTTCT
TCATATGATTTCTGAACGACAAAGCTTCTGTTAGAAACTAGAATTCTCCTTAGCCAAAGGGAAA
TGTTTCAGTGGTTGTGATCTTTTTGCATGGCTGTGTATGCAGATATTTGAAGTTGGTGATGTAG
TGACATTGGATGGGTCACGTGATGTTGGTGCTTCTAATAATCGTCGACTCGCAGCTTTGTACTG
TAATAAGCAGTCTGGGTTTGAGGTAAGACATGACAATTTGTCCGAGTATGATGTTTAAAGAACT
TCTATCCAGCCCTTGTCTAATCATGATGAACTATCCAGGAAATTATGGGTTTGGTAGATAGAAT
CGTGAATGTTGTGAGAGCTCCCCACATCAAATTTGGCCAGAATTACTATGTTCCTACAAATGTA
AGCATTTAAAGTTCTGTATGCATTCAAGTAAATCATCTGTCTTTTGCTGTCTTGAACATTTGTG
CTAATGTTTTGTTTGTAGGAACCTGAATTCTTTCCGAAAAGACAATGCAAAATTGTTATGAGTG
ATGGAAAGCAGATTGGCTACTTAGGAATTGTGCATGCCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.119163666
Functional Information
Coding potential Y
Potential coding position 27803505-27806594(+)
Potential amino acid sequence MEFYKSDMKLKKFLHIIENSPVYPVIYDSNRTVLSLPPIINGAHSAITLKTRNVFIECTATDLT
KAKIVLNTMVTMFSEYCENKFEVEPVEVVSHDGSKTIYPDLSCYKMEVSLSEVVGPIGISLDET
KVISLLNKMQLQAESCPSKGEPRISVSVPPTRSDILHARDLVEDVAIAYGYNNVPKSKPKCMTI
GGRQPLNRFSDKLRAEVARAGYMEVLTFTLCSREENFDMLNRTQDVNKAVIIANPRTSEFEVVR
TSLMSCLLKTLKHNIDHPRPIKIFEVGDVVTLDGSRDVGASNNRRLAALYCNKQSGFEEIMGLV
DRIVNVVRAPHIKFGQNYYVPTNEPEFFPKRQCKIVMSDGKQIGYLGIVHAEALPPQEINFVPL
KQEESFRADKLMEFYKSDMKLKKFLHIIENSPVYPVIYDSNRTVLSLPPIINGAHSAITLKTRN
VFIECTATDLTKAKIVLNTMVTMFSEYCENKFEVEPVEVVSHDGSKTIYPDLSCYKMEVSLSEV
VGPIGISLDETKVISLLNKMQLQAESCPSKGEPRISVSVPPTRSDILHARDLVEDVAIAYGYNN
VPKSKPKCMTIGGRQPLNRFSDKLRAEVARAGYMEVLTFTLCSREENFDMLNRTQDVNKAVIIA
NPRTSEFEVVRTSLMSCLLKTLKHNIDHPRPIKIFEVGDVVTLDGSRDVGASNNRRLAALYCNK
QSGFEEIMGLVDRIVNVVRAPHIKFGQNYYVPTNEPEFFPKRQCKIVMSDGKQIGYLGIVHAEA
LPPQEINFVPLKQEESFRADKLMEFYKSDMKLKKFLHIIENSPVYPVIYDSNRTVLSLPPIING
AHSAITLKTRNVFIECTATDLTKAKIVLNTMVTMFSEYCENKFEVEPVEVVSHDGSKTIYPDLS
CYKMEVSLSEVVGPIGISLDETKVISLLNKMQLQAESCPSKGEPRISVSVPPTRSDILHARDLV
EDVAIAYGYNNVPKSKPKCMTIGGRQPLNRFSDKLRAEVARAGYMEVLTFTLCSREENFDMLNR
TQDVNKAVIIANPRTSEFEVVRTSLMSCLLKTLKHNIDHPRPIKIFEVGDVVTLDGSRDVGASN
NRRLAALYCNKQSGFEEIMGLVDRIVNVVRAPHIKFGQNYYVPTNEPEFFPKRQCKIVMSDGKQ
IGYLGIVHAEALPPQEINFVPLKQEESFRADKLMEFYKSDMKLKKFLHIIENSPVYPVIYDSNR
TVLSLPPIINGAHSAITLKTRNVFIECTATDLTKAKIVLNTMVTMFSEYCENKFEVEPVEVVSH
DGSKTIYPDLSCYKMEVSLSEVVGPIGISLDETKVISLLNKMQLQAESCPSKGEPRISVSVPPT
RSDILHARDLVEDVAIAYGYNNVPKSKPKCMTIGGRQPLNRFSDKLRAEVARAGYMEVLTFTLC
SREENFDMLNRTQDVNKAVIIANPRTSEFEVVRTSLMSCLLKTLKHNIDHPRPIKIFEVGDVVT
LDGSRDVGASNNRRLAALYCNKQSGFEEIMGLVDRIVNVVRAPHIKFGQNYYVPTNEPEFFPKR
QCKIVMSDGKQIGYLGIVHAE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017