Plant Circular RNA Database

Detail information of Os07g0642100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os07g0642100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_034974
					
						Alias
						Os_ciR463
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 26725077-26725434  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						circseq_cup, find_circ
					
						Parent gene
						
							Os07g0642100						
					
						Parent gene annotation
						
							Nucleic acid-binding, OB-fold domain containing protein. (Os07t0
642100-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						65/14
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0642100-01:2

General Information
CircRNA Name	Os07g0642100_circ_g.2
ID in PlantcircBase	osa_circ_034974
Alias	Os_ciR463
Organism	Oryza sativa
Position	chr7: 26725077-26725434 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	circseq_cup, find_circ
Parent gene	Os07g0642100
Parent gene annotation	Nucleic acid-binding, OB-fold domain containing protein. (Os07t0 642100-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	65/14
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0642100-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAACCTAACCTGCCTGATTGAACCAGCAGCCCCAACATTCGCTGGCAAAATCAATCAAGAACCC
TTGAAGCATCGATTCAGCCCGTGCAAATCCGGCCCTcttatacgaaacagcacccagtgagttg
acaacgcggcagaagcaacgtaaccaagaaaatgccacgcaagacagatacccacaaaagacaa
agacctcg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 169
Transcript exons: 26725077-26725188,26725378-26725434
CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC
ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGGGCAAAATCAATCAAG
AACCCTTGAAGCATCGATTCAGCCCGTGCAAATCCGGCCCT
Transcript length: 184
Transcript exons: 26725077-26725183,26725358-26725434
CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC
ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGACAGCAGCCCCAACATTCGCTG
GCAAAATCAATCAAGAACCCTTGAAGCATCGATTCAGCCCGTGCAAATCCGGCCCT
Transcript length: 197
Transcript exons: 26725077-26725205,26725367-26725434
CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC
ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA
GCAACATTCGCTGGCAAAATCAATCAAGAACCCTTGAAGCATCGATTCAGCCCGTGCAAATCCG
GCCCT
Transcript length: 208
Transcript exons: 26725077-26725227,26725378-26725434
CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC
ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA
GGATAGTCACCAATAAAGTTGACGGCAAAATCAATCAAGAACCCTTGAAGCATCGATTCAGCCC
GTGCAAATCCGGCCCT
Transcript length: 212
Transcript exons: 26725077-26725219,26725366-26725434
CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC
ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA
GGATAGTCACCAATACCAACATTCGCTGGCAAAATCAATCAAGAACCCTTGAAGCATCGATTCA
GCCCGTGCAAATCCGGCCCT
Transcript length: 214
Transcript exons: 26725077-26725233,26725378-26725434
CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC
ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA
GGATAGTCACCAATAAAGTTGACCAGAGCGGCAAAATCAATCAAGAACCCTTGAAGCATCGATT
CAGCCCGTGCAAATCCGGCCCT
Transcript length: 215
Transcript exons: 26725077-26725222,26725366-26725434
CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC
ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA
GGATAGTCACCAATAAAGCCAACATTCGCTGGCAAAATCAATCAAGAACCCTTGAAGCATCGAT
TCAGCCCGTGCAAATCCGGCCCT
Transcript length: 225
Transcript exons: 26725077-26725230,26725364-26725434
CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC
ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA
GGATAGTCACCAATAAAGTTGACCAGCCCCAACATTCGCTGGCAAAATCAATCAAGAACCCTTG
AAGCATCGATTCAGCCCGTGCAAATCCGGCCCT
Transcript length: 247
Transcript exons: 26725077-26725232,26725344-26725434
CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC
ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA
GGATAGTCACCAATAAAGTTGACCAGAGCTGCCTGATTGAACCAGCAGCCCCAACATTCGCTGG
CAAAATCAATCAAGAACCCTTGAAGCATCGATTCAGCCCGTGCAAATCCGGCCCT
						
					

						Genomic sequence
						
							CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC
ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA
GGATAGTCACCAATAAAGTTGACCAGAGCTGCACAATAGAAAGAGATCATTAGCAAACATAAAC
CTGATACAGAAGGCACAACAAATACATGAGATATTTCTATATCGTTTAAAGCAAATATAGTAGA
AATAACCTAACCTGCCTGATTGAACCAGCAGCCCCAACATTCGCTGGCAAAATCAATCAAGAAC
CCTTGAAGCATCGATTCAGCCCGTGCAAATCCGGCCCT
						
					

			
		

Sequences
Splice junction sequence	TAACCTAACCTGCCTGATTGAACCAGCAGCCCCAACATTCGCTGGCAAAATCAATCAAGAACCC TTGAAGCATCGATTCAGCCCGTGCAAATCCGGCCCTcttatacgaaacagcacccagtgagttg acaacgcggcagaagcaacgtaaccaagaaaatgccacgcaagacagatacccacaaaagacaa agacctcg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 169 Transcript exons: 26725077-26725188,26725378-26725434 CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGGGCAAAATCAATCAAG AACCCTTGAAGCATCGATTCAGCCCGTGCAAATCCGGCCCT Transcript length: 184 Transcript exons: 26725077-26725183,26725358-26725434 CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGACAGCAGCCCCAACATTCGCTG GCAAAATCAATCAAGAACCCTTGAAGCATCGATTCAGCCCGTGCAAATCCGGCCCT Transcript length: 197 Transcript exons: 26725077-26725205,26725367-26725434 CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA GCAACATTCGCTGGCAAAATCAATCAAGAACCCTTGAAGCATCGATTCAGCCCGTGCAAATCCG GCCCT Transcript length: 208 Transcript exons: 26725077-26725227,26725378-26725434 CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA GGATAGTCACCAATAAAGTTGACGGCAAAATCAATCAAGAACCCTTGAAGCATCGATTCAGCCC GTGCAAATCCGGCCCT Transcript length: 212 Transcript exons: 26725077-26725219,26725366-26725434 CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA GGATAGTCACCAATACCAACATTCGCTGGCAAAATCAATCAAGAACCCTTGAAGCATCGATTCA GCCCGTGCAAATCCGGCCCT Transcript length: 214 Transcript exons: 26725077-26725233,26725378-26725434 CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA GGATAGTCACCAATAAAGTTGACCAGAGCGGCAAAATCAATCAAGAACCCTTGAAGCATCGATT CAGCCCGTGCAAATCCGGCCCT Transcript length: 215 Transcript exons: 26725077-26725222,26725366-26725434 CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA GGATAGTCACCAATAAAGCCAACATTCGCTGGCAAAATCAATCAAGAACCCTTGAAGCATCGAT TCAGCCCGTGCAAATCCGGCCCT Transcript length: 225 Transcript exons: 26725077-26725230,26725364-26725434 CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA GGATAGTCACCAATAAAGTTGACCAGCCCCAACATTCGCTGGCAAAATCAATCAAGAACCCTTG AAGCATCGATTCAGCCCGTGCAAATCCGGCCCT Transcript length: 247 Transcript exons: 26725077-26725232,26725344-26725434 CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA GGATAGTCACCAATAAAGTTGACCAGAGCTGCCTGATTGAACCAGCAGCCCCAACATTCGCTGG CAAAATCAATCAAGAACCCTTGAAGCATCGATTCAGCCCGTGCAAATCCGGCCCT
Genomic sequence	CTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCC ACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAA GGATAGTCACCAATAAAGTTGACCAGAGCTGCACAATAGAAAGAGATCATTAGCAAACATAAAC CTGATACAGAAGGCACAACAAATACATGAGATATTTCTATATCGTTTAAAGCAAATATAGTAGA AATAACCTAACCTGCCTGATTGAACCAGCAGCCCCAACATTCGCTGGCAAAATCAATCAAGAAC CCTTGAAGCATCGATTCAGCCCGTGCAAATCCGGCCCT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_017399 						
					
						PMCS
						0.406852886

Conservation Information
Conserved circRNAs	osi_circ_017399
PMCS	0.406852886

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Ye et al., 2016

circRNA

Detail information of Os07g0642100_circ_g.2

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