Detail information of AT2G04440_circ_g.1


General Information
CircRNA Name AT2G04440_circ_g.1
ID in PlantcircBase ath_circ_012787
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1541513-1542081  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method PcircRNA_finder
Parent gene AT2G04440
Parent gene annotation MutT/nudix family protein
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04440.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGCTTAGTTCTTGGATCTCCGACTTGCCTAACACTATTCCTGCCAATGCTTCTCATCGTATT
GGCATCGGTGCTCTTGTCCTAAACAAGAACAGAGAGatactgcagcatggacagtgaagcacaa
cagatctctttacttattggaaaagaagatagatacggccgtgttgaagtaaacctgatggaag
ttgaaccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATACTGCAGCATGGACAGTGAAGCACAACAGATCTCTTTACTTATTGGAAAAGAAGATAGATAC
GGCCGTGTTGAAGTAAACCTGATGGAAGTTGAACCCATGAATGCTGAAGATTTTAATGCAAAGC
TTGACGTTTCATTTAAGGCATGGAAGGATCAGGTATTAAAGATTTAATCCTTTGCAATGTTCCT
TTGATATGGTTTTCTTTGAACATGAGTTTCTAGTGTCAGTGAATGACTTTTGTGGACATGGACT
TCCAGGGGAAAAAAGGAATTTGGATAAAGCTTCCTTGTGAGCTTTCGAGTCTTGTTGACATTGC
AATGAAGGTAATTAAGAAGATGTTATGTTTGTGATTTGGTAGTTTTGTTTTTTGATTGATTCTT
GTTCAGCTTTAGTGATCGAATCGGATTCTATTTTGGTGATTTTACAGAAAGGGTTTACGTACCA
CCATGCCGAGAATGAATATGCGGTGCTTAGTTCTTGGATCTCCGACTTGCCTAACACTATTCCT
GCCAATGCTTCTCATCGTATTGGCATCGGTGCTCTTGTCCTAAACAAGAACAGAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.133009901
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017