Detail information of 2_circ_igg.3


General Information
CircRNA Name 2_circ_igg.3
ID in PlantcircBase ath_circ_012984
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2889186-2892426  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 4
Tissues inflorescences
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTAAAGGTCAATGTAGAAAACACATCCACTATAAATATGAAGGTTCTTGGTTTATAGTTTTCT
TTGTTTTCATGTTCATCGCTTTAAACCATGTTAAAGgacaagtgaaaccaacaggatgtcaagg
tggacaaaggtaccgtggaaaatgtggcactaacggaaccaagacgtgcgtaaaagatatgatg
ctacctaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACAAGTGAAACCAACAGGATGTCAAGGTGGACAAAGGTACCGTGGAAAATGTGGCACTAACGG
AACCAAGACGTGCGTAAAAGATATGATGCTACCTAAACTATTTAAAACTAAGCGTTGTGATTGT
CAAGACATGCTTGGGACATTCAAGGGCTGGCATTTCTGCACATGTTACAGTGGTCGTCCTGGTT
GCTAAGTTTCACTAATAGCTATAAAATAAAAATCTATTTACTAATACCTATAAGAGAAATAACA
AGAATTTCAAGTGTTTTGGTGTTGATCTAACATATGATATATATAGCCTTCTGTTTCTTAGTTA
TTTTTTTACTCTGATAAAGTAGAAAAAATCATGAGTTAATATTCTAAAAGTAGTATATACGCGC
ATCTCAATAAATCCATTTTTTCTTTCATTCTTTGGGTTAACTTGATGTATAGTGCTGGATAATA
ACAAAAGAAAAAAAAACTTTAAGTATTTTACCATCTCATAATTAGTAATTCTTTATTCCATTAT
ATAACTAATTATATCTTATAAGTTTTGTGACATTATTGAGAGAGTGTTTTAGTGTTGTTGACGA
CAAACTCTATTTTTATTTTGTGTGTTGGTGTAGGAATTAGCATCTTCGACAACACCAACTTAAA
TCGAAGGAAGTACAAATTAAACTGAGAATTCAACTATTCTGGAGTATCCAAGTTAAACATGTTA
ATGGGCCAAAATAAGGAGATCGCCAGACGATTTTGGTGAAAACAAGGAAGTCGCCATACGATCT
CGATCCAAATTAGGAAGATCGCCCAACCGACTTCCCAATTTGAGGAAAAAGAAGCTTTCCTTTT
TGATAAAGGAGAATGGTGAAAAGAATGGAATATATAAAATTTAGGAGGGGTTATTGGTTTATAG
ATTTATAAGGAATTGGAAATCCAAACAAAAATAATTTGTTATTCAATCATTGATTTTAAAATTC
TAATTAAAATCATGTTATTGATTTGATGATTTATAAATACTAGTTAAAATTCTTTATTATTCGT
TTAGTCATTTGTTTTTGGATTTGAGAATCCAAATTATGTTTTAAATGGAATTGAATGGATATGA
AAGAGAAAAATAGAAGGACTCAAATCCATGGGTAAACACATGTTATTTTAAAATCCATATATCT
TGATTTCATAATTAATAGAGATTTTCAGATTCTATATAGATTTACAAATCAATAAACCAATAAC
ACCTCTTTAAGCTCCGAAGAATTCGAAGTTTAGCTTATCTTTAAACCGTCTTAATAATGTATAT
ATAGAAGGGTTTGTCCTCTATTTTTGGCATCCGCAATTTAATACTAAAAACTCTAGTTTTCTAC
ATTGTTCTTAAGCACAACAAATATATTATTGATGTATTTTAAGATCAATGTATTTGTTTGTTAA
ATTTGAAAGTGATTAAAGAGTAAATCATTATTTGATTATACTAGTGAGTTTAGAACAAAAATAT
TAAGTACATTTCTTTTACTTTCTATAAATTACCTAATATTACATATCTACGAATTATCTCATAT
GAAAATATGCTTTAGATCTCCAAAATCTTAGGACCAATCCTGTACATATATAATCTTGTGTCAG
CCCAGTACATATATAATCTTATGAATACAAAGACTCATCGTTAACGCTGAATTACATATCTCCT
TCGTACCATTCCTTCAGGTCTTCCATGGCTTCCGAATCAACATGGACTCCAGCTGACTTCGGAA
GGTTCGAGATTATGCTATCATTGTCAACACCAGACAAAGTAGACTTTGGATACATTGCCAAGTA
TCTGGGAAAGCCTGTAGAAGAGGTCGTAAACCAATACAACGAGCTCTTGAGCTCGAATGATCCG
ACGATGCAAAGGTAAGAGATTATTTCTTGTTCTTGGGTTATTTTTGCTAATTTCTTGACCAATC
TAAATGAAATATGAATATGAATGATCCAAAAAAGGCGAAAAATGTTTTTTCAAATATGTAAAAG
TGTATGTATATTGGTTTTCTGTACCAAAACTGTCTTATGGTATGCTTTTTAGTACTTCTCCGGT
TATTGAGGTTTTGGTATTGCTACTACATGGACAAATAACTTTATATAGTCAGTTGCAATCTAAC
ATGATTACTCGAAGCCAATTTGCAAATACGAAAGAAAAAACAAAGTTACAACAAAACTGACGAC
AAACCACTGAACTATAAACTCTTTTCACGGATTTATTAGCACCAAATTACCTGATCTTATCGTC
GACGGATGATAAGAAAATGAATAATTATACTACAAATTTTACTACAGATCTCTAAATATATACT
CCATAAAATGTATAATCACTAGATATTTATACAAAAGACAAAATTACTTCACTAATAAAATTAT
GCAACTTACTTTACGATATTTCCAAAATTCAACTCTCAAGACAATATGAAGACAAACTCATCAA
TTACACAATATGAAGAGGTTGCCGACTCAATACTTCAATATCGAGCCAAAATCATCAATCCCCC
AAGAGATAAAGTTTGCCTATTCAAGACACCAAAAAGACAAAATCATTAGTCAATGAAAGCTTAC
TCAACATTTAAGGTGCCACATCAAGGATTATGCAAGACAACTTATGTATCATTTGTATAAATAA
AAAAGAAAGAGTGTGTAGAGAGTAGAGTGAATTTTCAGAGATCATTTTACAAACTCCCTTCATA
CTTGTTCTTACTCTCAAAGCTTTTAATCTTTGTTCTTGTATTTTGAATCTTGTATTTTCTATCC
AATTTAATAAAGTAAGTTTTAATCATATAATTTTTTATACCTTTACTCTTTAATAACTTTCAAA
GTTATATCTTTGTACAACAACTAATATATAATTTTATTTATATTATAAAATCTGGGTTTTAAGA
CGAACTTTATCCTAAAAAGAACAATGGTACTTTGACCCATTGTCTTGTTTCTTTCATCGAAGGT
CTTTCTTTGGGCTTTCTAAAAAGGTATTACATGCCAAGTTCGGCCTCACGGTCTAAAAGCTGTC
AAGTCATATAGTTTTAACCAAAAAAAAAAGAGAGATGCAACACGAGGACTTCCCGGGAGGTCAG
CCATCCTAGTACTACTCTCGCCCAAACACGCTTAACTGCGGATATCTGACGGGATCCGGTGCAT
TAGTACCTAAAGGTCAATGTAGAAAACACATCCACTATAAATATGAAGGTTCTTGGTTTATAGT
TTTCTTTGTTTTCATGTTCATCGCTTTAAACCATGTTAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.275231327
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017