Detail information of Os01g0197100_circ_g.1


General Information
CircRNA Name Os01g0197100_circ_g.1
ID in PlantcircBase osa_circ_000723
Alias Os_ciR2770
Organism Oryza sativa
Position chr1: 5237786-5240598  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0197100
Parent gene annotation Cytochrome P450, Brassinosteroids biosynthesis, Regulation of pl
ant architecture (Os01t0197100-01);Cytochrome P450 (Splicing var
iant) (Os01t0197100-02)
Parent gene strand +
Alternative splicing Os01g0197100_circ_g.2
Support reads 4/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0197150-00:5
Os01t0197100-01:5
Os01t0197100-02:4
Os01t0197150-00:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTCACTCCTTTTGGTGGTGGGCAGAGGCTGTGCCCAGGCCTGGATCTGGCCAGGCTGGAAGC
TTCCATCTTCCTTCACCACTTGGTCACCAGCTTCAGgtggtgttcgaaatcctggtgaggggcc
tgatcgggctggaggcaggggaggagatgcagcagctgaagcagcaattccaggaatttattgt
cggcctca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 797
Transcript exons: 5237786-5237935,5238255-5238503,5239581-5239670,5239781-
5239966,5240477-5240598
GTGGTGTTCGAAATCCTGGTGAGGGGCCTGATCGGGCTGGAGGCAGGGGAGGAGATGCAGCAGC
TGAAGCAGCAATTCCAGGAATTTATTGTCGGCCTCATGTCCCTCCCCATTAAGCTGCCTGGCAC
TAGGCTCTACAGATCACTCCAGGCCAAGAAGAAGATGGCGAGGCTGATACAGAGGATCATCCGG
GAGAAGAGGGCAAGGAGGGCCGCCGCCTCGCCGCCGCGGGACGCCATCGACGTGCTCATCGGAG
ACGGCAGCGATGAGCTCACCGACGAGCTCATCTCCGACAACATGATCGACCTCATGATCCCCGC
CGAGGACTCCGTCCCGGTGCTCATCACGCTCGCCGTCAAGTTCCTCAGCGAGTGCCCTCTCGCC
CTGCACCAACTGGAAGAGGAGAACATACAGCTCAAGAGGCGAAAAACCGACATGGGTGAGACCT
TGCAATGGACAGACTACATGTCATTGTCATTCACACAACATGTGATAACAGAGACGCTGCGGTT
GGGCAACATCATCGGTGGGATCATGCGCAAGGCGGTGCGCGACGTCGAGGTGAAGGGGCACCTC
ATCCCCAAGGGGTGGTGCGTGTTTGTGTACTTCCGGTCAGTCCACCTCGATGATACGCTCTACG
ATGAGCCCTACAAGTTCAACCCATGGAGGTGGAAGGAGAAGGACATGAGCAATGGCAGCTTCAC
TCCTTTTGGTGGTGGGCAGAGGCTGTGCCCAGGCCTGGATCTGGCCAGGCTGGAAGCTTCCATC
TTCCTTCACCACTTGGTCACCAGCTTCAG

Genomic sequence GTGGTGTTCGAAATCCTGGTGAGGGGCCTGATCGGGCTGGAGGCAGGGGAGGAGATGCAGCAGC
TGAAGCAGCAATTCCAGGAATTTATTGTCGGCCTCATGTCCCTCCCCATTAAGCTGCCTGGCAC
TAGGCTCTACAGATCACTCCAGGTACTCTCTCTCTCTCTCTCTCCCTCTCATCTAAGTTCTCTT
TCTCTCTCTACCTGTAGTACTCCATGTAAACCTGCACTGCACCACACATTGATCTCTACTACTC
TCTTCTGTCAGCCACTCTGTCTCTCCTTTATGTCTGATGTTGCTCAGCCCTACTCCATGCAGCA
TCAGCAGCAGCATGATCAGTGTCTCAGCTGCCATCACCATTAACCTCTCTTAATATGTTCTCTC
TGTTTCACAATCTTGGATTAAATGTATACAATTGCACTCGATCCATTGCACATTTTTGACACAT
TATTGTGTGTGTGGTCATCAGGCCAAGAAGAAGATGGCGAGGCTGATACAGAGGATCATCCGGG
AGAAGAGGGCAAGGAGGGCCGCCGCCTCGCCGCCGCGGGACGCCATCGACGTGCTCATCGGAGA
CGGCAGCGATGAGCTCACCGACGAGCTCATCTCCGACAACATGATCGACCTCATGATCCCCGCC
GAGGACTCCGTCCCGGTGCTCATCACGCTCGCCGTCAAGTTCCTCAGCGAGTGCCCTCTCGCCC
TGCACCAACTGGAAGTAAGCCTGTATACCTGAAACCTCTCTTACAACACAGTAAGCTCTTAATT
GGATCAATACCTGCATATAATTAGATGCTAGAGATGAATCCTGAACAGAAAAGAAAAATAAAAC
CATACCCTAGGAAGTAATTAAGGATCCTCTGTTGCTGGGCATGGGCAGTCAGCAAAAAGGGTCC
AGAACTGAAAAGAGTTGGATTTTCTTTCTTTTTTGTCTGAAAGGAACATGATCAACTATTCATT
TTGTCAGAGCCATGTGTTGTGCATGATATACTACTATCACTATTGTCTACTACACACAATGGCA
GAGGATCTGTGTCCCCAAACAAAAACTAGATCATAAAAAGCCTACGAATAAGGGAGAGATACGT
AGGTGGGCAGAAGGGATCAGCAGCATATAAAGGGTTGTGCCAACCTTGGTCCATCCCTTTCTTG
TTGGCATCTTAGAGCTATCATTATTATTTGTTATCTAATGTGCCATCTGAAAAGAAATACTACT
ACTACTTGTGTTTGGACCAATCTTTGCAAGATGACGTGCGTTGCATCATTGTCAATGTCAGGTC
GGGTACATACATATCATTAGAACAGAGTCGCCTTCTCACAAAAGAAAAGGCTTACTATCATGAT
GTATCATCTACTTACATATCATTAGTTTGTGCTATTATGCGTTTTTTTTTTCTAACCGGCTATA
AACGCATGTGCAAGGAATAGTTTTTTTGGTTGAAGTATGGAGGGTTTTTTATCAACTGGGGAAA
AAAGAAGGTTACATAATTTGGCTATTTATTCTATGGAGATTAGAAGGCAGCAGTAATATTTCCT
AGCTAGCATGTCCTATTACACCAGTAGCATTGTGTCATATGCTAGATTCCATTTACATCACTAC
AGTGCTAAGAAATTACTCGCGTGTCGACTGTGTTTCTGTTTTGATGCCATGTGAGCAATAAACT
CATTGAAACCTCTGCATGTCTACCACTGTTAGAGAACATGCATATCGCGGCTGAAGATAAAATC
CACCGTCAGTAATTACTTGTTGTAACAATGATGAATAATAACACCAATCACATTCTAATGCTAC
CAGGAGGAGAACATACAGCTCAAGAGGCGAAAAACCGACATGGGTGAGACCTTGCAATGGACAG
ACTACATGTCATTGTCATTCACACAACATGTAAGTATAGTTCATTAACACTGTAACATAAATTT
CTATAGCTCAAAATCTACTGGCCCCGTGTGGTTTTTTTCCCATGACCCCATGCGATTTGGAAAA
TTGGAGTGTAGGTGATAACAGAGACGCTGCGGTTGGGCAACATCATCGGTGGGATCATGCGCAA
GGCGGTGCGCGACGTCGAGGTGAAGGGGCACCTCATCCCCAAGGGGTGGTGCGTGTTTGTGTAC
TTCCGGTCAGTCCACCTCGATGATACGCTCTACGATGAGCCCTACAAGTTCAACCCATGGAGGT
GGAAGGTAAGAAAGAGCCCCACATTTGGTAGAGATGTTCATCCAATTGCTACCCCTTTAGGCAA
CACCAGCATAATAAGGATTTGATGAGTGCGGTTTTGGTGGGACTCCTAACATGTGGGCTTACTT
CTATATCAGTAATCTCATGATGGATTTGACATTGCCTTGTACTAACACTTAGTATTGCAGAAAA
TAACAGAGATTCCCTCAAAGTTGCATTAGTGATTGATATATACACCTAGGCAGAAGTCAATTGA
ATCTCCCAAAATAACTGGATTTGGTAGTTCTTTGAACTGGTAAATTCAGACAACATAAGCTTAA
GCTGTCCAGGAAAGGAATACACACCCTTTTTTTCCCTCTATTGTGTACTTTGTGTAAGCTCTGA
AAATGATATGCAAATAATTAATCTAGGCAAATGATGGTGCTGTACTACTGTTGAGGCATCCTAT
CATTATGATTTGATTTGGGAAGTCTAATAATGTGCTAATTGGTCAAGAAATCAATCAATCTCAA
CAGGAGAAGGACATGAGCAATGGCAGCTTCACTCCTTTTGGTGGTGGGCAGAGGCTGTGCCCAG
GCCTGGATCTGGCCAGGCTGGAAGCTTCCATCTTCCTTCACCACTTGGTCACCAGCTTCAG
Conservation Information
Conserved circRNAs osi_circ_011326
PMCS 0.120432098
Functional Information
Coding potential Y
Potential coding position 5237841-5237804(+)
5240494-5237898(+)
5239955-5237804(+)
5237900-5240597(-)
Potential amino acid sequence MQQLKQQFQEFIVGLMSLPIKLPGTRLYRSLQAKKKMARLIQRIIREKRARRAAASPPRDAIDV
LIGDGSDELTDELISDNMIDLMIPAEDSVPVLITLAVKFLSECPLALHQLEEENIQLKRRKTDM
GETLQWTDYMSLSFTQHVITETLRLGNIIGGIMRKAVRDVEVKGHLIPKGWCVFVYFRSVHLDD
TLYDEPYKFNPWRWKEKDMSNGSFTPFGGGQRLCPGLDLARLEASIFLHHLVTSFRWCSKSW*(
+)
MAASLLLVVGRGCAQAWIWPGWKLPSSFTTWSPASGGVRNPGEGPDRAGGRGGDAAAEAAIPGI
YCRPHVPPH*(+)
MEVEGEGHEQWQLHSFWWWAEAVPRPGSGQAGSFHLPSPLGHQLQVVFEILVRGLIGLEAGEEM
QQLKQQFQEFIVGLMSLPIKLPGTRLYRSLQAKKKMARLIQRIIREKRARRAAASPPRDAIDVL
IGDGSDELTDELISDNMIDLMIPAEDSVPVLITLAVKFLSECPLALHQLEEENIQLKRRKTDMG
ETLQWTDYMSLSFTQHVITETLRLGNIIGGIMRKAVRDVEVKGHLIPKGWCVFVYFRSVHLDDT
LYDEPYKFNPWRWKEKDMSNGSFTPFGGGQRLCPGLDLARLEASIFLHHLVTSFRWCSKSW*(+
)
MGRDMRPTINSWNCCFSCCISSPASSPIRPLTRISNTT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017