Plant Circular RNA Database

Detail information of AT2G27980_circ_g.9

			
						 General Information
					
						CircRNA Name
						AT2G27980_circ_g.9
					
						ID in PlantcircBase
						ath_circ_015271
					
						Alias
						2:11915737-11917513
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 11915737-11917513  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT2G27980						
					
						Parent gene annotation
						
							Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger d
omain-containing protein
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G27980_circ_g.5 AT2G27980_circ_g.6 AT2G27980_circ_g.7 AT2G27980_circ_g.8 AT2G27980_circ_g.10 AT2G27980_circ_g.11 						
					
						Support reads
						1/1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G27980.1:7

General Information
CircRNA Name	AT2G27980_circ_g.9
ID in PlantcircBase	ath_circ_015271
Alias	2:11915737-11917513
Organism	Arabidpsis thaliana
Position	chr2: 11915737-11917513 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT2G27980
Parent gene annotation	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger d omain-containing protein
Parent gene strand	-
Alternative splicing	AT2G27980_circ_g.5 AT2G27980_circ_g.6 AT2G27980_circ_g.7 AT2G27980_circ_g.8 AT2G27980_circ_g.10 AT2G27980_circ_g.11
Support reads	1/1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G27980.1:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TACTCACTTTCTGGTTGGTTGTTCTCGCCTGTTACTTTGGCGAGGACTGGATTTTGACCTTCTA
AGGATAGATTTTGGATCCACACTTGGCCTAGACGAActgcataacacgcatacacttgggagct
cggtcacaaaagagctgacaattcgaatgcatctattggttatctcagcaattgcatcaactcc
ctgaactc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 762
Transcript exons: 11915737-11915950,11916067-11916233,11916618-11916670,11
916758-11916817,11916899-11916980,11917118-11917210,1191
7421-11917513
CTGCATAACACGCATACACTTGGGAGCTCGGTCACAAAAGAGCTGACAATTCGAATGCATCTAT
TGGTTATCTCAGCAATTGCATCAACTCCCTGAACTCTCCCAGCTGCAATGGCGTTGAGATTGCT
ATCCACGAACTTCTCTCTCTCAACCATATTCACACAATATTTGCAGGACCACCTCTCACTCGGA
AGGCTTGGTAGAGAAGCACATACTTTATGATATGATCTTGGACAGGTATCACAACACACGAGCT
CACCCCCATCCCTACATATACTGCAAAGGTCATCATTTTCATGGATGGAAAACCTCTGGTCCAT
TGATAGTGCTACTGATAGTTCATGAAGAGAAACCCCATTGGTTGTATAAATGTGCTGAAACGGC
TTCCGGCGACTTGCACATCCAGCGTGGGCCTCAAACGTTGAAGGACTGACCACTTTGTTGCAAC
AAGAACAATGTATCCCAAATCCCTTCTTATAGCCGACAAGCATTTTCTCTCCAGCAACGAAATA
ACCTACTTCAGTCCCATCTGGCAGTATATCATCCTCAAAAACAAGTTTGTGCAGCCGCAAATCC
TTTCTGGTTAGTTTCCCATGGCTGTTGCTTTTGATTGAGCTGTTTTTTGACTCGCTCAGAATAG
TTCCTGGAACCACACCTGGCTCAGTTGACTTTCTGGTTGGTTGTTCTCGCCTGTTACTTTGGCG
AGGACTGGATTTTGACCTTCTAAGGATAGATTTTGGATCCACACTTGGCCTAGACGAA
						
					

						Genomic sequence
						
							CTGCATAACACGCATACACTTGGGAGCTCGGTCACAAAAGAGCTGACAATTCGAATGCATCTAT
TGGTTATCTCAGCAATTGCATCAACTCCCTGAACTCTCCCAGCTGCAATGGCGTTGAGATTGCT
ATCCACGAACTTCTCTCTCTCAACCATATTCACACAATATTTGCAGGACCACCTCTCACTCGGA
AGGCTTGGTAGAGAAGCACATACTAGATAAAACCAAAACAGACAGATAAGCTCTATCAAGTTCA
CGCTCCAAAAACATTTTAAAAGTAGCAATAGAAGAATTCCAACAAACAAACATGGAAAACTGCA
AATACCAAACCTTTATGATATGATCTTGGACAGGTATCACAACACACGAGCTCACCCCCATCCC
TACATATACTGCAAAGGTCATCATTTTCATGGATGGAAAACCTCTGGTCCATTGATAGTGCTAC
TGATAGTTCATGAAGAGAAACCCCATTGGTTGTATAAATGTGCTGAAACCTGATCATTAACAGA
AGATGAATTAGTTGTTTAAACAGTTTCTCTGTGAATCGTACAATCAATGATCTTAAGGATCCAC
GAACTTTACACTAATTGTGCAAGTTTTATATGTTTACTTTTTGCAACCATGGGAAGAAATGTTT
ATGTTTACTCTTTGACAATACAATGGCCGAGCGAAGAAATAATGGTTCTGGTTATCAGGTTTCC
AAGGAGAATGTGAGTAGCTTCACTATAATCCTCAATCTCTTGTATTTCAGCAAATTATTTTATT
ACGTTACTACAATTTAATTATATCAGAATCGGAGATTTAAAAAAAAAATCAGAAAAGGAACAAA
CCCATTAACTACTAGAGCATAAATATGGAAATAGTTGCAAGGAACTTACGGCTTCCGGCGACTT
GCACATCCAGCGTGGGCCTCAAACGTTGAAGGACTGACCTGGTCCCATAAACATTATATAGGCT
GATTCAAACCCCCTATATACTTTAATGCCAGGAAAGCTAATTGACATTAAAGAGAGCTTACCAC
TTTGTTGCAACAAGAACAATGTATCCCAAATCCCTTCTTATAGCCGACAAGCATTTTCTGCACA
ATGAACAAAATGGTTGGCGAAGGAAAAGTTTCAAAAAGGGGCTGGAGAAAAGACAATTATCATG
CAGATCTAACCTCTCCAGCAACGAAATAACCTACTTCAGTCCCATCTGGCAGTATATCATCCTC
AAAAACAAGTTTGTGCAGCCGCAAATCCCTTTCAAAATGACAAAAGATAGACTGAGAACTAATA
TAAGTTAGACAGACAGCAAGGAAGTCGACAATCTAGCAGACTAGCACTAGACCATATATACATC
GGATAAGTGCTGTCACACTTATAACAACACTACTCACTTTCTGGTTAGTTTCCCATGGCTGTTG
CTTTTGATTGAGCTGTTTTTTGACTCGCTCAGAATAGTTCCTGGAACCACACCTGGCTCAGTTG
ACCTGTAGAACCCCAAGATAAATTAAGCTTAGCCAATAACCCCAGTGTAAAACTAAAGAGTATA
TGCCATATTTCCAATATTATATTCTCATTTACTCATTTTCCAGAATGATAAATGGTAGATTGTG
AGCTAATTACAATATAAAAAGGCAGCAAAAACACAAAACGTAACAACTAGAAAGCACAACCATC
AATATAACAACAATACTCACTTTCTGGTTGGTTGTTCTCGCCTGTTACTTTGGCGAGGACTGGA
TTTTGACCTTCTAAGGATAGATTTTGGATCCACACTTGGCCTAGACGAA
						
					

			
		

Sequences
Splice junction sequence	TACTCACTTTCTGGTTGGTTGTTCTCGCCTGTTACTTTGGCGAGGACTGGATTTTGACCTTCTA AGGATAGATTTTGGATCCACACTTGGCCTAGACGAActgcataacacgcatacacttgggagct cggtcacaaaagagctgacaattcgaatgcatctattggttatctcagcaattgcatcaactcc ctgaactc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 762 Transcript exons: 11915737-11915950,11916067-11916233,11916618-11916670,11 916758-11916817,11916899-11916980,11917118-11917210,1191 7421-11917513 CTGCATAACACGCATACACTTGGGAGCTCGGTCACAAAAGAGCTGACAATTCGAATGCATCTAT TGGTTATCTCAGCAATTGCATCAACTCCCTGAACTCTCCCAGCTGCAATGGCGTTGAGATTGCT ATCCACGAACTTCTCTCTCTCAACCATATTCACACAATATTTGCAGGACCACCTCTCACTCGGA AGGCTTGGTAGAGAAGCACATACTTTATGATATGATCTTGGACAGGTATCACAACACACGAGCT CACCCCCATCCCTACATATACTGCAAAGGTCATCATTTTCATGGATGGAAAACCTCTGGTCCAT TGATAGTGCTACTGATAGTTCATGAAGAGAAACCCCATTGGTTGTATAAATGTGCTGAAACGGC TTCCGGCGACTTGCACATCCAGCGTGGGCCTCAAACGTTGAAGGACTGACCACTTTGTTGCAAC AAGAACAATGTATCCCAAATCCCTTCTTATAGCCGACAAGCATTTTCTCTCCAGCAACGAAATA ACCTACTTCAGTCCCATCTGGCAGTATATCATCCTCAAAAACAAGTTTGTGCAGCCGCAAATCC TTTCTGGTTAGTTTCCCATGGCTGTTGCTTTTGATTGAGCTGTTTTTTGACTCGCTCAGAATAG TTCCTGGAACCACACCTGGCTCAGTTGACTTTCTGGTTGGTTGTTCTCGCCTGTTACTTTGGCG AGGACTGGATTTTGACCTTCTAAGGATAGATTTTGGATCCACACTTGGCCTAGACGAA
Genomic sequence	CTGCATAACACGCATACACTTGGGAGCTCGGTCACAAAAGAGCTGACAATTCGAATGCATCTAT TGGTTATCTCAGCAATTGCATCAACTCCCTGAACTCTCCCAGCTGCAATGGCGTTGAGATTGCT ATCCACGAACTTCTCTCTCTCAACCATATTCACACAATATTTGCAGGACCACCTCTCACTCGGA AGGCTTGGTAGAGAAGCACATACTAGATAAAACCAAAACAGACAGATAAGCTCTATCAAGTTCA CGCTCCAAAAACATTTTAAAAGTAGCAATAGAAGAATTCCAACAAACAAACATGGAAAACTGCA AATACCAAACCTTTATGATATGATCTTGGACAGGTATCACAACACACGAGCTCACCCCCATCCC TACATATACTGCAAAGGTCATCATTTTCATGGATGGAAAACCTCTGGTCCATTGATAGTGCTAC TGATAGTTCATGAAGAGAAACCCCATTGGTTGTATAAATGTGCTGAAACCTGATCATTAACAGA AGATGAATTAGTTGTTTAAACAGTTTCTCTGTGAATCGTACAATCAATGATCTTAAGGATCCAC GAACTTTACACTAATTGTGCAAGTTTTATATGTTTACTTTTTGCAACCATGGGAAGAAATGTTT ATGTTTACTCTTTGACAATACAATGGCCGAGCGAAGAAATAATGGTTCTGGTTATCAGGTTTCC AAGGAGAATGTGAGTAGCTTCACTATAATCCTCAATCTCTTGTATTTCAGCAAATTATTTTATT ACGTTACTACAATTTAATTATATCAGAATCGGAGATTTAAAAAAAAAATCAGAAAAGGAACAAA CCCATTAACTACTAGAGCATAAATATGGAAATAGTTGCAAGGAACTTACGGCTTCCGGCGACTT GCACATCCAGCGTGGGCCTCAAACGTTGAAGGACTGACCTGGTCCCATAAACATTATATAGGCT GATTCAAACCCCCTATATACTTTAATGCCAGGAAAGCTAATTGACATTAAAGAGAGCTTACCAC TTTGTTGCAACAAGAACAATGTATCCCAAATCCCTTCTTATAGCCGACAAGCATTTTCTGCACA ATGAACAAAATGGTTGGCGAAGGAAAAGTTTCAAAAAGGGGCTGGAGAAAAGACAATTATCATG CAGATCTAACCTCTCCAGCAACGAAATAACCTACTTCAGTCCCATCTGGCAGTATATCATCCTC AAAAACAAGTTTGTGCAGCCGCAAATCCCTTTCAAAATGACAAAAGATAGACTGAGAACTAATA TAAGTTAGACAGACAGCAAGGAAGTCGACAATCTAGCAGACTAGCACTAGACCATATATACATC GGATAAGTGCTGTCACACTTATAACAACACTACTCACTTTCTGGTTAGTTTCCCATGGCTGTTG CTTTTGATTGAGCTGTTTTTTGACTCGCTCAGAATAGTTCCTGGAACCACACCTGGCTCAGTTG ACCTGTAGAACCCCAAGATAAATTAAGCTTAGCCAATAACCCCAGTGTAAAACTAAAGAGTATA TGCCATATTTCCAATATTATATTCTCATTTACTCATTTTCCAGAATGATAAATGGTAGATTGTG AGCTAATTACAATATAAAAAGGCAGCAAAAACACAAAACGTAACAACTAGAAAGCACAACCATC AATATAACAACAATACTCACTTTCTGGTTGGTTGTTCTCGCCTGTTACTTTGGCGAGGACTGGA TTTTGACCTTCTAAGGATAGATTTTGGATCCACACTTGGCCTAGACGAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.182766056

Conservation Information
Conserved circRNAs	NA
PMCS	0.182766056

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT2G27980_circ_g.9

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