Detail information of Os09g0116400_circ_g.7


General Information
CircRNA Name Os09g0116400_circ_g.7
ID in PlantcircBase osa_circ_038441
Alias NA
Organism Oryza sativa
Position chr9: 1306377-1310247  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os09g0116400
Parent gene annotation CCAAT-binding factor domain containing protein. (Os09t0116400-01
);Similar to predicted protein. (Os09t0116400-02)
Parent gene strand +
Alternative splicing Os09g0116400_circ_g.8 Os09g0116400_circ_g.9
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os09t0116400-02:4
Os09t0116400-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCTGCTTTCCTTGACAAATTCATGGAGAAGAAACCAAAAGGAAACCGCATCGCTGAAGGGAAA
TGGCATGGTGGATCCCAAATTGCACCAGCTAAAAAGccagaattatttcttggtttattggtga
aagcaatgaaaaatgatgtcatgttaaagagagtggctgcatttgcaaagcggttgctgcaggt
atgctttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGAATTATTTCTTGGTTTATTGGTGAAAGCAATGAAAAATGATGTCATGTTAAAGAGAGTGG
CTGCATTTGCAAAGCGGTTGCTGCAGGTATGCTTTTTTTCTCACTCAGAGCACCGTTCTGTGTT
TAGCATGCTGCCTATTCTAATGCTGTGGCTGTTAGCGGTTACATCCATCAAACTGGTCAAGTTT
GCAAAACAAAGAGACACCTATACAAAACACTTGGCCTTTTATGCTATGAAAACATGAATATATT
TTATGCTGTTTCAAACTAGTGTCTGCTATTACATAGCACAGAAAATTAGTGTGTAGAACATGAA
GGGTGTGTTTGGATAATGGGAAATGGAGGGTGGGATTGGGATTGGGAAATGAATGAAGGGTTAG
GATTTAAAGATGCCTTTTGGTGGGTGGGAAATGATTTCCCCATCCCATTAGCCAAACGCTGCCG
AACAACTTGTGGTTCATGGTTTATTATGTTGTGGCATGCCTATTAATGGTTATCATAAAAAGCT
GTATCCTTGCAATTTCCTGCCTCACATTGGCATAGACGCATAGTTTTTTCATTTTCCATATGTT
AACTTTTTTGATAATTCTTACCATTCTTTTTATCTTGGTTCTCCTAGTTTCGTTCTTTATAGTT
TACTAGCAAGATGCCTGTGCGTTGCAATGGATAAATCTAGATGGTTAATTCCTTCTTTACCTAC
ACATGTGTGATGATATGGTAATGATAATCCCCAAAGTAACCACCACATAAATCTAACAAACAGT
TATAGCTAACCAATTCAGAGGAAATTTTCACAAAATGGTGTCTGAACAGTGAACAGTGAGTCAG
TGACCAGCGTGCTAACATTCCATAATGTCGATAGCTGATGCTTCCTAGAAGTTTTAGTAACTAA
GGGTAAATGAAAAAATGGCAAATCCATGCACCCAACATAAAAATACCAAAGGCATGTTCAACTA
CTTTGACATGGTTCAAACTTAAGCTAGTGAGACCATTTATCAGTATTGAGATGTAGAAAATGAA
GGTAGTGTTTTATTCATTTTAAAATTGCAAGATTGCTCTTCAATCAGTTGTTTGTAGCAAACGT
CCTTCACAAATCATATCTGGAAATATTGAGTATATTTAGTCTGGGGAACTACTGAAAATAAATA
TAGAAAAATACAAAGTACAAAACCTGGATAGCTTGTTATTAGAAGCTTAATAAAAGTTTCTCCC
TGTAGAATATTGACCTAAAAGCATAACCGCCTTTGCATCAGCATCAGTATTTGTCTGTGAGAAA
GGGCAGGGTTGATATATTCATGTATGATGTAAGCAATTTAGTTCAAAACTATGCTACAAGGGAG
CGTTAGTAACAGTTTAAAACAAAAGAAAAGGTAGCTGTTTGTATGTAATGAAAAAACCTGATAG
TGAGAATCTATAAGCATGTACCAGTAATGGAGATAGAATCAATGAATTTGAATTTAATTTCCAA
AAAAACTCGACCGTGGGCGAATGACCGCTTCTATGGCTTTTTCATTTAGAAGAAGCCTTAACCA
AACTGGCCGAGAAAAGCCAAAAACTCTGGCCCCCCTACACGCGGACTTGGCCCCTATAGATCGA
TCCTTAACCCGCGCTTTGAGGCCCCTGCCTCCTAGACGAGGGACCACCCTCTAGGTTGATTCTT
AACACGTGTTTTTTTATGAGAGGCCAACAAGTGACTTTTTTTAACTAGGCCTGAAATTCCCTCC
CGTGGGGAGTTGAACCCAGGACCTAAAGGTGCTACTTGAGCACTGTAACTGCTAGGCTATAGGT
GCATGCTGTATGCTACCTCCGCCTAGGGGTAATGGGCCCAACTTTTTAGCCTACAAAATTTGAG
GGCTGGGTCTAAAATATATGATGGCTAGGTAGGGTTGTGAAAGGACCCATGGAATTATCACCCC
TACCTCCGTCCCACATCAATCACAGATGTGGTTATCCAAATCACAGGAGGGCTAGGCAAGAGTT
GTTAGAGGTGGCACTGCGGCAGGTGGCATTGTCCCCTCTTCTCGACTTCGTCATAGCCAGCTTC
GAACGGGCGAGCAGATTGTTCATGTCAGGTTTCCAAGGCTGTGGCCCCACATGTCAGATGGTCT
TTCAAAGGAGAATAGATTATGGGACACTGGGGGGCCGAAATGTCAGCTGTAGGGGTGGTGTGGC
AGAACCACCACCACCACTACTAACGTTTGTAGTAGTATAGAAATAGAGAGCTGTTGCAACACTG
TTGAAATTTCACAGAATACGTATTAGTTGATCACTATAGCTTAAAGCACAATGGTGGTTGTTTT
GCCTCTTGAGCTGATTAGATGTGCTAAGATGTGGACTACTGAATGATGTGGAGCCCTTATCTGA
GTACCAGCCAGTAGGAGATTCAGATCACACATGTTCAGAAACAAATATTGACTAGTCCACTCTG
TGTTATTTGGTTGATGTCTAATGTTTCTATTTTAAACTCTTTATGTAATAGATTTGCAAAATTT
AAACGCCCGCCTGAACAATGTCTGCTTTACTTAATTGTTTTATGATATTGTAGACAAAAGAAAT
GCTAAAGTTGATTTTTTCAATAGAATATAGAAGTTACAAACTAACAATAGTCGTGTATATGCAT
GTTATATACAATTTTAACCATTCACTATGCATCCTACACATGGAAACTACAAAAAAAAAAAAAG
AAAGAAGAGGAATGTGGGAGAGTGTTCAGACTTTTTGCAGCCAGAATTTGCTTATACCATAGCC
ATCCCTGATAAATGTTTCTGATAGTTCCTGTGATAGCACTATTCAGAAAAGTTTTGGGAGTATT
GATTATTTACTGATACGGTTATGAATCTGAGTGAAACTACAGAAGTTCTATATTTTAATTATGA
TGTCTCTCAACAGGTTGCTCTTCAGCGGCCTCCTCAATATGCTTGCGGATGCCTTTTCATACTG
TCAGAGGTCCTTAAAGCAAAGCCACCATTGTGGTATGCAACTAGTTCTCATAACCACACATTCC
ATTAGTTATTTATTTGAGATGTAATTTACATCCTATTCTTCAGGGCAATTGTGCTCCAGAATGA
ATCTGTTGATGATGGTATTGAGCACTTTGAAGACATAGTAGAGAATACTGATTGTCCAGCTATT
ACCTCAAGAACTACAGATAAATGCAATGACATATTAGCTACTCTTGAGAAATGCAATTCAGATG
CTGAGGATGCCTGTGATACTATAGAATGTGTAAGTCCAATCTCAAGTGGTGAGAAAGATGGAAA
AGGCACATCAGCTGAGGGGTTGACACTTCAGGCATCTTATAATCCACGACACAGAGAGCCTTCT
TACTGGTATTGTCTGTTTACTTCCATTTCTCTGTATGTCTGTTTACTTCCATTTCTGTGTATGG
GTTATTCGGACTAGTTGGTTACTAATGCAATGAATGGGAATATGGTTATGCAGATTCTAGTGCA
ATCCAATTTCAAACAAAAATTCCTAAATTTTTTAGTTTGGCATAAAAAAGAAAAGATTGGTCAC
CAATCACTATTTGACTTGAGGCACCAAACTTCACTCTCTTTTTTTTTGGACAGAGAAACATTAA
TCTTTTTCATGTTATCTTATTGATCAGCTGTCTATTTTTATTTCCTCAGTAATGCAGACCATGC
CAGTTGGTGGGAGCTTACTGCACTGGCCTTACATGTGCACCCATCGGTATCTACTATGGCTAGG
ACATTGCTATCTGGTAACAATATCGTTTATAGTGGTGATCCATTGACAGACCTATCACTCCCTG
CTTTCCTTGACAAATTCATGGAGAAGAAACCAAAAGGAAACCGCATCGCTGAAGGGAAATGGCA
TGGTGGATCCCAAATTGCACCAGCTAAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.107303567
Functional Information
Coding potential Y
Potential coding position 1306411-1310244(+)
1306428-1310117(-)
Potential amino acid sequence MKNDVMLKRVAAFAKRLLQVALQRPPQYACGCLFILSEVLKAKPPLWAIVLQNESVDDGIEHFE
DIVENTDCPAITSRTTDKCNDILATLEKCNSDAEDACDTIECVSPISSGEKDGKGTSAEGLTLQ
ASYNPRHREPSYCNADHASWWELTALALHVHPSVSTMARTLLSGNNIVYSGDPLTDLSLPAFLD
KFMEKKPKGNRIAEGKWHGGSQIAPAKKPELFLGLLVKAMKNDVMLKRVAAFAKRLLQVALQRP
PQYACGCLFILSEVLKAKPPLWAIVLQNESVDDGIEHFEDIVENTDCPAITSRTTDKCNDILAT
LEKCNSDAEDACDTIECVSPISSGEKDGKGTSAEGLTLQASYNPRHREPSYCNADHASWWELTA
LALHVHPSVSTMARTLLSGNNIVYSGDPLTDLSLPAFLDKFMEKKPKGNRIAEGKWHGGSQIAP
AKKPELFLGLLVKAMKNDVMLKRVAAFAKRLLQVALQRPPQYACGCLFILSEVLKAKPPLWAIV
LQNESVDDGIEHFEDIVENTDCPAITSRTTDKCNDILATLEKCNSDAEDACDTIECVSPISSGE
KDGKGTSAEGLTLQASYNPRHREPSYCNADHASWWELTALALHVHPSVSTMARTLLSGNNIVYS
GDPLTDLSLPAFLDKFMEKKPKGNRIAEGKWHGGSQIAPAKKPELFLGLLVKAMKNDVMLKRVA
AFAKRLLQVALQRPPQYACGCLFILSEVLKAKPPLWAIVLQNESVDDGIEHFEDIVENTDCPAI
TSRTTDKCNDILATLEKCNSDAEDACDTIECVSPISSGEKDGKGTSAEGLTLQASYNPRHREPS
YCNADHASWWELTALALHVHPSVSTMARTLLSGNNIVYSGDPLTDLSLPAFLDKFMEKKPKGNR
IAEGKWHGGSQIAPAKK(+)
MTSFFIAFTNKPRNNSGFLAGAIWDPPCHFPSAMRFPFGFFSMNLSRKAGSDRSVNGSPL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017