Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os09g0116400_circ_g.7 |
ID in PlantcircBase | osa_circ_038441 |
Alias | NA |
Organism | Oryza sativa |
Position | chr9: 1306377-1310247 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os09g0116400 |
Parent gene annotation |
CCAAT-binding factor domain containing protein. (Os09t0116400-01 );Similar to predicted protein. (Os09t0116400-02) |
Parent gene strand | + |
Alternative splicing | Os09g0116400_circ_g.8 Os09g0116400_circ_g.9 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os09t0116400-02:4 Os09t0116400-01:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.107303567 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1306411-1310244(+) 1306428-1310117(-) |
Potential amino acid sequence |
MKNDVMLKRVAAFAKRLLQVALQRPPQYACGCLFILSEVLKAKPPLWAIVLQNESVDDGIEHFE DIVENTDCPAITSRTTDKCNDILATLEKCNSDAEDACDTIECVSPISSGEKDGKGTSAEGLTLQ ASYNPRHREPSYCNADHASWWELTALALHVHPSVSTMARTLLSGNNIVYSGDPLTDLSLPAFLD KFMEKKPKGNRIAEGKWHGGSQIAPAKKPELFLGLLVKAMKNDVMLKRVAAFAKRLLQVALQRP PQYACGCLFILSEVLKAKPPLWAIVLQNESVDDGIEHFEDIVENTDCPAITSRTTDKCNDILAT LEKCNSDAEDACDTIECVSPISSGEKDGKGTSAEGLTLQASYNPRHREPSYCNADHASWWELTA LALHVHPSVSTMARTLLSGNNIVYSGDPLTDLSLPAFLDKFMEKKPKGNRIAEGKWHGGSQIAP AKKPELFLGLLVKAMKNDVMLKRVAAFAKRLLQVALQRPPQYACGCLFILSEVLKAKPPLWAIV LQNESVDDGIEHFEDIVENTDCPAITSRTTDKCNDILATLEKCNSDAEDACDTIECVSPISSGE KDGKGTSAEGLTLQASYNPRHREPSYCNADHASWWELTALALHVHPSVSTMARTLLSGNNIVYS GDPLTDLSLPAFLDKFMEKKPKGNRIAEGKWHGGSQIAPAKKPELFLGLLVKAMKNDVMLKRVA AFAKRLLQVALQRPPQYACGCLFILSEVLKAKPPLWAIVLQNESVDDGIEHFEDIVENTDCPAI TSRTTDKCNDILATLEKCNSDAEDACDTIECVSPISSGEKDGKGTSAEGLTLQASYNPRHREPS YCNADHASWWELTALALHVHPSVSTMARTLLSGNNIVYSGDPLTDLSLPAFLDKFMEKKPKGNR IAEGKWHGGSQIAPAKK(+) MTSFFIAFTNKPRNNSGFLAGAIWDPPCHFPSAMRFPFGFFSMNLSRKAGSDRSVNGSPL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |