Detail information of orai.004G257200_circ_g.2


General Information
CircRNA Name orai.004G257200_circ_g.2
ID in PlantcircBase gra_circ_000401
Alias Chr04:59342719|59345207
Organism Gossypium raimondii
Position chrChr04: 59342719-59345207  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.004G257200
Parent gene annotation NA
Parent gene strand +
Alternative splicing orai.004G257200_circ_g.1
Support reads 2
Tissues ovule
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Gorai.004G257200.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTTCTTCAACTGATGCTGTGCAACCTGGTTGGATTCTAAGATACTTAAAGAGCATTAGTTCT
ACTCAGATAAGAGAAATGAGGAGGAACCTTGCCGAGcattctattgattattggctttgggcgg
atttgattgctcctgaatccgaaaggctattgaagaatgttgtgagagttgttaagcaggagga
ggcggatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 846
Transcript exons: 59342719-59342892,59343686-59343843,59343932-59344079,59
344537-59344652,59344727-59344865,59345097-59345207
CATTCTATTGATTATTGGCTTTGGGCGGATTTGATTGCTCCTGAATCCGAAAGGCTATTGAAGA
ATGTTGTGAGAGTTGTTAAGCAGGAGGAGGCGGATTTATTTTATGTGCCGTTTTTCACCACGAT
TAGCTTTTTCTTATTGGAGAAACAACAATGCAAGGCGTTATATAGGGAAGCCCTGAAATGGGTG
ACAGATCAACCTGCATGGAAACGATCTGAAGGAAGGGATCACATATTTCCCATTCATCATCCGT
GGTCCTTTAAGTCAGTTCGCAGATATGTGAAAAATGCAATTTGGCTTTTACCAGACATGGACTC
CACAGGGAATTGGTACAAACCGGGGCAAGTTTCACTGGAGAAGGACCTCATTCTCCCTTATGTA
CCAAATGTTGATTTATGTGATGCAAAATGCTTATTGGAAAGTGAATCAAAGAGAACAACACTGC
TTTTCTTCCGCGGACGACTTAAAAGAAATGCTGGAGGAAAGATACGTGCTAAAATTGGTGCAGA
ACTAACAGGTGCCAAGGATGTAGTCATAGAGGAGGGAACTGCTGGGGAGGGAGGAAAAGCTGCT
GCTCAGAAGGGGATGCGCAGGTCTATATTTTGTTTAAGTCCAGCTGGTGACACTCCCTCCTCTG
CTAGATTGTTTGATGCTATTGTCAGTGGGTGTATACCTGTTATTATTAGTGATGAATTGGAGCT
CCCTTTTGAAGGAATACTTGATTATAGGAAGATGGCTGTATTTATTTCTTCAACTGATGCTGTG
CAACCTGGTTGGATTCTAAGATACTTAAAGAGCATTAGTTCTACTCAGATAAGAGAAATGAGGA
GGAACCTTGCCGAG

Genomic sequence CATTCTATTGATTATTGGCTTTGGGCGGATTTGATTGCTCCTGAATCCGAAAGGCTATTGAAGA
ATGTTGTGAGAGTTGTTAAGCAGGAGGAGGCGGATTTATTTTATGTGCCGTTTTTCACCACGAT
TAGCTTTTTCTTATTGGAGAAACAACAATGCAAGGCGTTATATAGGGTGTGAGTGCATTTCCTG
GTTTTAAAATATTTGTTTCTACATTTTCTTGTTACCCTGTTTTAGAATGTTTAGAATACGAGCT
TGATTTGACTCCTATTCTGTTGATTACTTTTTGTGTCTACGGTAAGTGTGTGCGACTGTTTATT
GTTTTGTCATGCACTTGCTGAATTATTCGGGTTTATCAATTATTATAATTTAGGTAAATGCATT
TTATGGAGTCATTCTTTTCAAAGAGGTAGTGATTTATGTTGCACTAGCTCTTTGTGTTTGGTGA
AGTACCTGTTTCCAATACTTGTGCCCGACACATAGATACAGGGATGTGACTTTCAAGCATACTT
CAAATAAGTAGAAAAACTTGGAAATTTTGACCATACCCATGCCCAACACATACTCACACCTCCA
AGTAACATAGGTAGTACTTAGTAGGGCAAGCAAATTAAATTATAATTGGGTCAATTCCTGTGCA
TTTCAAGTTCTAGATTGAGTTTATTTAATAATTTAAATATTTTCTGCTTGACTTTCTTCTTTTT
TGCTGTCACTAAACTCAACTTTTGAGATCCAATTTGTATTAAGGTGTTGATTGGGTTGTCTTGT
CTTAGTTTTGGTTTGTGTTTCATGAATTATGTTATCGTTTTTTAATTCCATTTTCTCTGATTGA
AAAGTTTTTGGGGCACATATATTGCACAAAACAGTGCATGGTTTCCCTTCAAGAACTTGTTTAA
TGTTTTATTTGAACAAGTGTGTAAGTTTTAGAATTTGCCTATTCAAGGATTTTGTTTCCTTTTG
GTTTCAGGAAGCCCTGAAATGGGTGACAGATCAACCTGCATGGAAACGATCTGAAGGAAGGGAT
CACATATTTCCCATTCATCATCCGTGGTCCTTTAAGTCAGTTCGCAGATATGTGAAAAATGCAA
TTTGGCTTTTACCAGACATGGACTCCACAGGGAATTGGTAAATATATGACTCTTGCAGATGAGA
TAGAACTTTCAACTTTACTAGTCATTTCAGCTTTTGAAAATGATATACTTCAACATTCTAGGTA
CAAACCGGGGCAAGTTTCACTGGAGAAGGACCTCATTCTCCCTTATGTACCAAATGTTGATTTA
TGTGATGCAAAATGCTTATTGGAAAGTGAATCAAAGAGAACAACACTGCTTTTCTTCCGCGGAC
GACTTAAAAGAAATGCTGTGAGGGTTTCAACTGTCTTATTAAAAAAGCCTTTGATTTTTTGCAT
TTTCACTGAATTTGCTGTAATGAAAGAATGGCTCATTTTGGGCTTGTCAATAATATATATGCTT
CTGCAAGAGGTTTCCAGAGTTTTGCCAACTTCCCCCCCCCCCTTCAAATACTAGAATGGTTTAA
CAAGAAAGGGAAGGTGGAGGGAAGAGAGGAGGAAGATGTGCCTATGTGTTTCGGAATTTTTATG
AATTTGAATGGAGTGTTAAGTTATCCTTTTTAAACTGAAGAAGATAATTTCTCGGGCCTTTTCT
TTGCATCCCACCTAGATATTTTAAGGGTTGACTTCAAAGTAGCATTACATGTTTTCTCTCCAAC
ATTGCCTCTACTCTCTGTCAGTCTTACATGCTTGAATAATGTTTGTCATTTGATCTCTTGGCTG
CTTATTTTGTAATTTTTCTTTTTCAGGGAGGAAAGATACGTGCTAAAATTGGTGCAGAACTAAC
AGGTGCCAAGGATGTAGTCATAGAGGAGGGAACTGCTGGGGAGGGAGGAAAAGCTGCTGCTCAG
AAGGGGATGCGCAGGTAAGATAAGCTGATTCTTTTTCATGGTGTTACATATCCTCCTTAATGCT
GTGATTTTTCTCCTCTGTTATCAGGTCTATATTTTGTTTAAGTCCAGCTGGTGACACTCCCTCC
TCTGCTAGATTGTTTGATGCTATTGTCAGTGGGTGTATACCTGTTATTATTAGTGATGAATTGG
AGCTCCCTTTTGAAGGAATACTTGATTATAGGAAGGTATGCGTGTTTTTTCCTTTGCTTGAGTT
GTCACTTCCTTTCCCTTCCCTTGATGCATCTTGGCTACCTTGAGGGTGCTTTCTACATTTTGTT
CAATGACCGCCTAAAAATAGAACTTCACTACTTTTGCTGATTAAGCTGCAATCAAAGAATAAAA
TGGAGTTCATATACACATAATAGCTAGTAAGTCACTTATTTTTTATTGTCTATTTTTTGTTTCT
TTTCATGCAGATGGCTGTATTTATTTCTTCAACTGATGCTGTGCAACCTGGTTGGATTCTAAGA
TACTTAAAGAGCATTAGTTCTACTCAGATAAGAGAAATGAGGAGGAACCTTGCCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.455021056
Functional Information
Coding potential Y
Potential coding position 59343824-59345204(+)
Potential amino acid sequence MDSTGNWYKPGQVSLEKDLILPYVPNVDLCDAKCLLESESKRTTLLFFRGRLKRNAGGKIRAKI
GAELTGAKDVVIEEGTAGEGGKAAAQKGMRRSIFCLSPAGDTPSSARLFDAIVSGCIPVIISDE
LELPFEGILDYRKMAVFISSTDAVQPGWILRYLKSISSTQIREMRRNLAEHSIDYWLWADLIAP
ESERLLKNVVRVVKQEEADLFYVPFFTTISFFLLEKQQCKALYREALKWVTDQPAWKRSEGRDH
IFPIHHPWSFKSVRRYVKNAIWLLPDMDSTGNWYKPGQVSLEKDLILPYVPNVDLCDAKCLLES
ESKRTTLLFFRGRLKRNAGGKIRAKIGAELTGAKDVVIEEGTAGEGGKAAAQKGMRRSIFCLSP
AGDTPSSARLFDAIVSGCIPVIISDELELPFEGILDYRKMAVFISSTDAVQPGWILRYLKSISS
TQIREMRRNLAEHSIDYWLWADLIAPESERLLKNVVRVVKQEEADLFYVPFFTTISFFLLEKQQ
CKALYREALKWVTDQPAWKRSEGRDHIFPIHHPWSFKSVRRYVKNAIWLLPDMDSTGNWYKPGQ
VSLEKDLILPYVPNVDLCDAKCLLESESKRTTLLFFRGRLKRNAGGKIRAKIGAELTGAKDVVI
EEGTAGEGGKAAAQKGMRRSIFCLSPAGDTPSSARLFDAIVSGCIPVIISDELELPFEGILDYR
KMAVFISSTDAVQPGWILRYLKSISSTQIREMRRNLAEHSIDYWLWADLIAPESERLLKNVVRV
VKQEEADLFYVPFFTTISFFLLEKQQCKALYREALKWVTDQPAWKRSEGRDHIFPIHHPWSFKS
VRRYVKNAIWLLPDMDSTGNWYKPGQVSLEKDLILPYVPNVDLCDAKCLLESESKRTTLLFFRG
RLKRNAGGKIRAKIGAELTGAKDVVIEEGTAGEGGKAAAQKGMRRSIFCLSPAGDTPSSARLFD
AIVSGCIPVIISDELELPFEGILDYRKMAVFISSTDAVQPGWILRYLKSISSTQIREMRRNLAE
(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b