Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G10660_circ_g.2 |
ID in PlantcircBase | ath_circ_001944 |
Alias | At_ciR4730 |
Organism | Arabidpsis thaliana |
Position | chr1: 3533523-3533933 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, find_circ |
Parent gene | AT1G10660 |
Parent gene annotation |
AT1G10660 protein |
Parent gene strand | + |
Alternative splicing | AT1G10660_circ_g.1 AT1G10660_circ_g.3 |
Support reads | 2/2 |
Tissues | leaf/whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G10660.2:2 AT1G10660.1:2 AT1G10660.4:2 AT1G10660.3:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.180663281 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3533583-3533930(+) |
Potential amino acid sequence |
MESYTSIGDTEQGTYRPPIALDGEGNTSKASNRPSEAPARKTAGFWVYIFQILFQTCAGAVVLT DIVFWAIIYPFTKGYKLSFYASVLSVYGCCIYNKEASGNMESYTSIGDTEQGTYRPPIALDGEG NTSKASNRPSEAPARKTAGFWVYIFQILFQTCAGAVVLTDIVFWAIIYPFTKGYKLSFYASVLS VYGCCIYNKEASGNMESYTSIGDTEQGTYRPPIALDGEGNTSKASNRPSEAPARKTAGFWVYIF QILFQTCAGAVVLTDIVFWAIIYPFTKGYKLSFYASVLSVYGCCIYNKEASGNMESYTSIGDTE QGTYRPPIALDGEGNTSKASNRPSEAPARKTAGFWVYIFQILFQTCAGAVVLTDIVFWAIIYPF TKGYKLSF(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |