Plant Circular RNA Database

Detail information of HORVU6Hr1G012260_circ_g.1

			
						 General Information
					
						CircRNA Name
						HORVU6Hr1G012260_circ_g.1
					
						ID in PlantcircBase
						hvu_circ_000033
					
						Alias
						NA
					
						Organism
						
							Hordeum vulgare						
					
						Position
						
							chrchr6H: 23622984-23625550  JBrowse»						
					
						Reference genome
						
							Hv_IBSC_PGSB_v2.38						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							HORVU6Hr1G012260						
					
						Parent gene annotation
						
							protein_coding
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaves, seeds
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							AG-CA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						HORVU6Hr1G012260.12:3
HORVU6Hr1G012260.4:4
HORVU6Hr1G012260.7:2
HORVU6Hr1G012260.5:3
HORVU6Hr1G012260.6:4
HORVU6Hr1G012260.11:4
HORVU6Hr1G012260.1:4
HORVU6Hr1G012260.3:3
HORVU6Hr1G012260.8:3
HORVU6Hr1G012260.2:3
HORVU6Hr1G012260.9:4
HORVU6Hr1G012260.10:4

General Information
CircRNA Name	HORVU6Hr1G012260_circ_g.1
ID in PlantcircBase	hvu_circ_000033
Alias	NA
Organism	Hordeum vulgare
Position	chrchr6H: 23622984-23625550 JBrowse»
Reference genome	Hv_IBSC_PGSB_v2.38
Type	ei-circRNA
Identification method	CIRI
Parent gene	HORVU6Hr1G012260
Parent gene annotation	protein_coding
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaves, seeds
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	AG-CA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	HORVU6Hr1G012260.12:3 HORVU6Hr1G012260.4:4 HORVU6Hr1G012260.7:2 HORVU6Hr1G012260.5:3 HORVU6Hr1G012260.6:4 HORVU6Hr1G012260.11:4 HORVU6Hr1G012260.1:4 HORVU6Hr1G012260.3:3 HORVU6Hr1G012260.8:3 HORVU6Hr1G012260.2:3 HORVU6Hr1G012260.9:4 HORVU6Hr1G012260.10:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CACCTGTTCCTGCACCGACGGCACCACCTATGCCACCACAGCCCGCCCAAGTTCCTCCTACTCC
ACCAAGGATGCAGGTGCAAGATAAGGGACCAGTTCCggattttacttgcaatgcttactgtttt
cgaaagaattggggataatttcatatcttggtaatgtgacttacttgaattagggtttttggtg
attacagt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GGATTTTACTTGCAATGCTTACTGTTTTCGAAAGAATTGGGGATAATTTCATATCTTGGTAATG
TGACTTACTTGAATTAGGGTTTTTGGTGATTACAGTTGGGGGACTTTATCTGCTTGATGGTTGA
TAGTTCCATTTTCATACAGGTTGCCAATGTATAGTGAAGCAAAGCTGGCTTTTATCGTGTACTT
GTGGTATCCCAAGACACAGGTTTGGTTTCCTGCTTTTTCTGTTGCCGTAACATGTTTATGTCTT
GTCGCTTTTCTGTAATAAAGGATTATTCCAGGGGACTTCTTATGTCTACGAATCGTTCTTCAAG
CCGTATATTGCAAAACACGAATCTGAGATTGATCGTAATCTTCTTGAGTTGAGGACAAGGGCTA
GTGATATGGCTGTTATTTACTTCCACAAGGTTGCAGACTACAGCCAGTCAAGGTTCCATGAAAT
CTTGCAATATATCGCTTCTCAATCACAAGGATCTCGTCCTCAGGTACTTTCAAACTTTAAAGTT
TTCTTGCTAGCCATTTTGTACTGCTACTGTCCATTGTAGCGAGAAGTGTAACGCTACCTACTGC
ACTTGTTCCCTTGCCAGTTCCCACTATATGATTTTCTGACCTTCAATATTTTGTAGTATATGAT
ATAATCGGGGGGCTTCTTTCATTCTGTTAGTGCTATTTAGGTTTTCTTCTATTTGAGCCCAATG
TTGTAGGCTAGATATCCTGCCTTAACATAGAATATGATATAATCTGGGGCCTTCTTTCATAATG
GTAGTGCTATCTTAGGTTTTCTTCTATTTGAGCCTAATGTTGTAGGCTGGATATCCTGCCTTAA
CATAGAATTTTAAATGCTAGGACAGGAATTTCTTCACATGTTGAATTGATAACGATCCATGTAT
TACATCCTACCACCACATTTTTTCTTGTTAAAATGATCTTTAATTTACATGCCCTGATTTCTAG
TGGAAGTTAGAAAAGTATGAATAAAACCCTGTTCTGTGTTCCTTTTCACAGCACGTATTTTTAC
ATTTCGCATCTCGTCTACAAGTGGTGCTTTTATTGCTAACGGGATATTAATTATTTTTTGTAGT
TAGTAGTTATAGTTGGACCCTACCACGGACCCTGTGCATGCGGAAGCTACGTGCACTGGGCTGC
CCTTTTTTAGTAGTTGTAGTTTTTTTATTATTTTTGAGATAGCTCGCCATCCATGCTGAATGCT
ATTTTTAATAGTTGTAGTTGGAGTTAAATAATACCGTGTTTGGGTAAAGGAAATATAATATGAA
GCTCGGAGATCATATGCACCAAAATTTTGGCATATGCATCTACCCTTCATTTATAATAGGGGGA
TTATGCATCTATTTTTTCCTAGTTCTAAGAATTTATGTGAACGTGTGAATGATCGATACATCTG
GGAAATTGTCTCTGGTCTTCTAGGAGCACTACTACTAAAGATTAATGCCACACCATATTCTGAA
ATTGTAGAAATATCTCCACCTAGTGTTCAGTTGAATATTCTTCCTGGTTTGCACCCTTTGGAAG
AATTTGTGTGTATGTCCTGGTTGCACCCTTTGCGTCGCAAAAGTTCTGTTATGTCATCAACTCA
TCACCATCTAGTTGCATTATAGCACTATGCCTTTTTCTTTCCAGCAATTGTACCTCGATTTATC
AGTATTCTGTAATCTCTGTTGGTACTTGGTAGGAAATGGCATTTGTTTCTCTGGTTTCTTTTAC
AGCTTAGGAGCCTGAGTTGTGGTTAATGGTGGCATTTGCGTGGAGAAAGTTAGCTAGCAATGAT
TTTGTAGTATCATGTCATTCATTTACCATACTTCTGTACCGATTTTCTTGCAAGAGTTATCACA
ATATGATTATACATTTGGGCACACAGACAAAAGCAAACTTGTCCAGAATTACCTTGCCATTCTT
AATGCTTTACAGATTTTTGTAGAGACAACATGGATATTTGGTCAAATAGACGACTTGCAATTTA
ATTTTGGTCCATGCCCCTTGTCTTCTAGTGAAGTTTTATCTATAGTTCCTTATATAGTTTGTAT
CATCTTCAATGAATAACACTTCCATTCTTGTTACACTGTTTGTTAGAGTTAGTGACTAGAGATC
ACATACAAATATATAATCTCCATATTTGAATGTGATAACCGCTGCACCACTCCATCATACCATT
TATTGCATCATTGTATTAACAAAGGGGGAGATGTAGGCGTTCATGTACAGAAGTTGTTCTGTGT
GTATTTGTCGAGAGTGCAGTATGGGCTTGTGTTTACCAGCTGTAGCATTTAGAGTCAGATGGTT
CTTTTGAACTCATTAACATATCTAGTATTGTGTGCCGTGCGTATGCCAGTGTCAGATGTATATG
TCTCATGTGCTGACTTTACTGTCTCTGTCTCTGTGCAGGCACAGCAGCAGCAGCAGCGTCCACC
ACCTCCACGTACTCGGATGGCGAACCCTGCACCACCACCTGTTCCTGCACCGACGGCACCACCT
ATGCCACCACAGCCCGCCCAAGTTCCTCCTACTCCACCAAGGATGCAGGTGCAAGATAAGGGAC
CAGTTCC
						
					

			
		

Sequences
Splice junction sequence	CACCTGTTCCTGCACCGACGGCACCACCTATGCCACCACAGCCCGCCCAAGTTCCTCCTACTCC ACCAAGGATGCAGGTGCAAGATAAGGGACCAGTTCCggattttacttgcaatgcttactgtttt cgaaagaattggggataatttcatatcttggtaatgtgacttacttgaattagggtttttggtg attacagt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGATTTTACTTGCAATGCTTACTGTTTTCGAAAGAATTGGGGATAATTTCATATCTTGGTAATG TGACTTACTTGAATTAGGGTTTTTGGTGATTACAGTTGGGGGACTTTATCTGCTTGATGGTTGA TAGTTCCATTTTCATACAGGTTGCCAATGTATAGTGAAGCAAAGCTGGCTTTTATCGTGTACTT GTGGTATCCCAAGACACAGGTTTGGTTTCCTGCTTTTTCTGTTGCCGTAACATGTTTATGTCTT GTCGCTTTTCTGTAATAAAGGATTATTCCAGGGGACTTCTTATGTCTACGAATCGTTCTTCAAG CCGTATATTGCAAAACACGAATCTGAGATTGATCGTAATCTTCTTGAGTTGAGGACAAGGGCTA GTGATATGGCTGTTATTTACTTCCACAAGGTTGCAGACTACAGCCAGTCAAGGTTCCATGAAAT CTTGCAATATATCGCTTCTCAATCACAAGGATCTCGTCCTCAGGTACTTTCAAACTTTAAAGTT TTCTTGCTAGCCATTTTGTACTGCTACTGTCCATTGTAGCGAGAAGTGTAACGCTACCTACTGC ACTTGTTCCCTTGCCAGTTCCCACTATATGATTTTCTGACCTTCAATATTTTGTAGTATATGAT ATAATCGGGGGGCTTCTTTCATTCTGTTAGTGCTATTTAGGTTTTCTTCTATTTGAGCCCAATG TTGTAGGCTAGATATCCTGCCTTAACATAGAATATGATATAATCTGGGGCCTTCTTTCATAATG GTAGTGCTATCTTAGGTTTTCTTCTATTTGAGCCTAATGTTGTAGGCTGGATATCCTGCCTTAA CATAGAATTTTAAATGCTAGGACAGGAATTTCTTCACATGTTGAATTGATAACGATCCATGTAT TACATCCTACCACCACATTTTTTCTTGTTAAAATGATCTTTAATTTACATGCCCTGATTTCTAG TGGAAGTTAGAAAAGTATGAATAAAACCCTGTTCTGTGTTCCTTTTCACAGCACGTATTTTTAC ATTTCGCATCTCGTCTACAAGTGGTGCTTTTATTGCTAACGGGATATTAATTATTTTTTGTAGT TAGTAGTTATAGTTGGACCCTACCACGGACCCTGTGCATGCGGAAGCTACGTGCACTGGGCTGC CCTTTTTTAGTAGTTGTAGTTTTTTTATTATTTTTGAGATAGCTCGCCATCCATGCTGAATGCT ATTTTTAATAGTTGTAGTTGGAGTTAAATAATACCGTGTTTGGGTAAAGGAAATATAATATGAA GCTCGGAGATCATATGCACCAAAATTTTGGCATATGCATCTACCCTTCATTTATAATAGGGGGA TTATGCATCTATTTTTTCCTAGTTCTAAGAATTTATGTGAACGTGTGAATGATCGATACATCTG GGAAATTGTCTCTGGTCTTCTAGGAGCACTACTACTAAAGATTAATGCCACACCATATTCTGAA ATTGTAGAAATATCTCCACCTAGTGTTCAGTTGAATATTCTTCCTGGTTTGCACCCTTTGGAAG AATTTGTGTGTATGTCCTGGTTGCACCCTTTGCGTCGCAAAAGTTCTGTTATGTCATCAACTCA TCACCATCTAGTTGCATTATAGCACTATGCCTTTTTCTTTCCAGCAATTGTACCTCGATTTATC AGTATTCTGTAATCTCTGTTGGTACTTGGTAGGAAATGGCATTTGTTTCTCTGGTTTCTTTTAC AGCTTAGGAGCCTGAGTTGTGGTTAATGGTGGCATTTGCGTGGAGAAAGTTAGCTAGCAATGAT TTTGTAGTATCATGTCATTCATTTACCATACTTCTGTACCGATTTTCTTGCAAGAGTTATCACA ATATGATTATACATTTGGGCACACAGACAAAAGCAAACTTGTCCAGAATTACCTTGCCATTCTT AATGCTTTACAGATTTTTGTAGAGACAACATGGATATTTGGTCAAATAGACGACTTGCAATTTA ATTTTGGTCCATGCCCCTTGTCTTCTAGTGAAGTTTTATCTATAGTTCCTTATATAGTTTGTAT CATCTTCAATGAATAACACTTCCATTCTTGTTACACTGTTTGTTAGAGTTAGTGACTAGAGATC ACATACAAATATATAATCTCCATATTTGAATGTGATAACCGCTGCACCACTCCATCATACCATT TATTGCATCATTGTATTAACAAAGGGGGAGATGTAGGCGTTCATGTACAGAAGTTGTTCTGTGT GTATTTGTCGAGAGTGCAGTATGGGCTTGTGTTTACCAGCTGTAGCATTTAGAGTCAGATGGTT CTTTTGAACTCATTAACATATCTAGTATTGTGTGCCGTGCGTATGCCAGTGTCAGATGTATATG TCTCATGTGCTGACTTTACTGTCTCTGTCTCTGTGCAGGCACAGCAGCAGCAGCAGCGTCCACC ACCTCCACGTACTCGGATGGCGAACCCTGCACCACCACCTGTTCCTGCACCGACGGCACCACCT ATGCCACCACAGCCCGCCCAAGTTCCTCCTACTCCACCAAGGATGCAGGTGCAAGATAAGGGAC CAGTTCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.127487307

Conservation Information
Conserved circRNAs	NA
PMCS	0.127487307

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Darbani et al., 2016

circRNA

Detail information of HORVU6Hr1G012260_circ_g.1

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