Detail information of Os10g0536900_circ_igg.1


General Information
CircRNA Name Os10g0536900_circ_igg.1
ID in PlantcircBase osa_circ_007833
Alias Os_ciR1102
Organism Oryza sativa
Position chr10: 20895995-20900524  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 14
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCGGCCAACCCGGGCCTCGCCGCCGGC
CTCGTCCGCCTCCACTTCCACGACTGCTTCGTCAGGggttgcgacgggtcggtgttgctggagg
cgagcgacgggcaggcggagaagaacgcgcagccgaacctgagcctgcgaggctacgacgtcgt
cgacaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGCGACGGGTCGGTGTTGCTGGAGGCGAGCGACGGGCAGGCGGAGAAGAACGCGCAGCCGA
ACCTGAGCCTGCGAGGCTACGACGTCGTCGACAGGGTGAAGGCGAGGTTGGAGGCGACGTGCAA
GCAGACGGTGTCGTGCGCCGACATCCTCGCCTACGCCGCCCGCGACAGCGTCAGGGTCATGGTG
AGAGAGCACGTCGTCCACACGCCGACATCCTCGCCTACTCACGCAGCTCAGTTGTAATCACATT
CTTTCTCATCGCCGGCTGGCATTTGATGGCGTGCAGACCGGCGGCTACAAGTACGAGGTGCCCG
GCGGGAGGCCGGACGGGACGGTGTCGCGGGCGAGCATGACCGGCGACCTCCCGCCGCCGAAGCA
GCGGAACGTGGACCAGCTGGCGCGGTACTTCACCAGCAAGGGCCTGACCGTGGACGACATGGTG
GTGCTCTCCGGCGCGCACACGCTCGGCGTCGCCAGGTGCGGCACGTTCGGGTACAGGCTGACGA
GCGACGGCGACAAGGGCATGGACGCCGCGTTCCGGAACGCGCTGAGGAAGCAGTGCAACTACAA
GTCCAACAACGTCGCCGCCCTCGACGCCGGCAGCGAGTACGGCTTCGACACCAGCTACTACGCC
AACGTGCTCGCCAACCGCACCGTGCTCGAGTCCGACGCCGCGCTCAACTCGCCCAGGACCTTGG
CGAGGGTCACCCAGCTCAGGGGCAACCAGGCGCTGTTCACGAGCAGCTTCGCCGCCGCCATGGT
CAAGATGGGCGGCCTCCGCGGCGGCTACGCCGGCAAGGTCCGCGACAACTGCCGGCGGGTCAGG
ACATGATCGCGATGAGCGAATTTGCACGCAAGATCGAGCGCGGCACGATCGACGGATTGAATTC
ATTGCTTCATCCATGACTTTCTCCTCGATTAATCTTCTTCTCTCGGTTTCAGCTTGTATTTGTT
TGTTCACCTTTTACTGGCTCACCGCCACCATTTTGTTCAGATTCAACAATATTTTTTGTACACA
TAACTTCTTGATTGACTGTTCTTTTCTTTATTCTGGATTTTTGTTTTCACTTTTCCCAAGTACT
TAAATAGCGTGATTCGTGCAAAAATTTTCTTGAAATATTTTTTAAAATAACATAGTAGTTAGTT
TATTCGTTTATACCCTTAAACATATCACATAAATTAAATTGTCCATCAATTTCAACTATCTCAA
ACAGGGATATAAACATTGGCCCATATTATTCCATTTACAGGATATATTCGATTCACTCCTAAAG
TTCAGATTATGTTGACTCTAGTCAAACTGCTTCAAACAGGATGCAGTTTGCACAAACGGGCACG
GCCCATCAGATAAGAGCAGGCCATAACTCACGAGGGCCCATCAGATAGATACAGCCCAACAGGG
TATGGGCCGTGGTCAGCCCAGCCGCCCCGGCAGTTCACACGCCGGATCAGAGTCCCTCGGCGGC
CGGGCCAACGGCGAAGCGCGCCCAGTTCGCGGCGGCGGAAAGCCGGCAAGTTCATGACCTCGCC
GCCGCCGGCGTGGCCCCCATTCTGACCCAAATGTGAACAAACATGCATCTCGTGGTCGCAACCC
CGGATACGCCTTTGCACAAGCCGGCAAAACCAACGCGCATTTGGCGCTTTTGTCATGTGCTAAG
AGCCTAATAATCTCGTAAAAGCGTTTCTTGATAGCTTGATGATCATGTTCTCTGAACCAGAAAG
TTCAGGCAAGCTGCTGCTCTGCTCTAAAGGAAAATGGCTGGCCTGGCTAGCTAGCTCACAGTTT
TTATCAAAGGCATCGATCGCTAGCTGTACTGCAGAAGAAGATTACGGGGACCCATGGAACAGCA
AGGCTGCAACCTGCAGGAGAGGCAGTTTTGCAGAAGCCGTTCATACTGTCTTTGGATTCAGCAT
TCTTGACAACCTGAACACTGTTACATGTTCAGTGTACATGTAACAGTGAGCTGCCTTCTTCGGT
TTGTTCTTTACTCCTTGTCTTATCAGCCACACCTAAAATTTAAATTTTAAATCTTAATTTTAAA
ATTAATTTTGATTTTTTATCGTAGTTTATATTTTACGTTGGCTTTAAAGTTACTAATAAGACAT
ATATAAAAGTATTTCTATAAAATATTTTTAGTCGGTTATGATCAGCTCTATGCGAAACGATGTG
AGGGTTAGACAACGAAAATACGTGTGACTACTGCTTTCTGTATATTCAGTAGATATTAAATTAG
TACATGATAACCAACCATAGGACATCAGGACATTTCTTCTGTAGGCATTCAGTTGTTAAACGGA
TGTACAGTATATTTTATCGGATTGGCTCCCGATCCAAACTGTATTATAAAGATTGATTCCTTAC
CCTGAGGTCAAAATTCTGACCGGCAAGAGTCGTTTAACATCGAAGAATCTTGTCAGGACATGAG
CTCTACCAAACACGATCGCAGCATGTGCATCGCAGTCGCTACTCTCATTCAGTCACTTACTCAC
AGTCTCACACCAGTGGCCTGAATCAGTAGCAGATTAGCCGTTGCAAGGTGGCTCTGTACATGTT
CTTGCTGAAAATATAACTCCACTTGACTGAATCATAGCCTTATCTTCCGGACCTGCATGTGTAG
ATCTCACTAGTTTTTTCACACATCAAATCTGAAGTATGAACTCGTGAGTCATGAGTCTAATGAC
CCTCTTAGCATACGGAGAAACTAATACTACTGCTGTTCTGTAATAACGAATTAGTGAAGAGTCT
CCTCTGTCTCCAACCAACCAAACTGGATGCTTTGATGCTACGTTGTTAATTCCAATCAACATTT
TGATATGGAAACACAGATTAGAAAGGAGGTGCTTTCTAATTAACTAGCAAGCAAACGTCGATGA
AACCGAGCATGCAGTGAGCCAATCATTTGATCCTTGCTGGATTCTTTCTAGCTGGGAAGCATTT
GCCACTACTCTACAGTATACATTACTGCCTGGAACTTAATTGGCTGTCAGGAATCAAGTTTTCT
ATTCCATTGGGTACGTATCTGATTCTCCCAATTGCCTCTCCTTGCAGATTACAGACATATACTG
CCATTGAAATGGGACTAAAGGCACAGATTGGACCATCCTATACTGCAATTGTATAGAGGATTTG
TTAATTTGGACCCCCAAATGCAACATAACGACACCCCAGCGTTAGCCCCAGGAAATAATTTATC
ATTTCATCAGAAGAACAAGATTATCCAGCAGCTCACAAAAAAGGCTCACCAAACTGTAAAGGAG
ACCATAAACATTTATTCAGAATTCAGTCCTAGCAGAAAGCCAAACATTCACTACTGATGCTTCA
GCTGTAACTACACGATGTCATAGCCAACATCCAATGCTGTCAATGTAGCAACACAGGAAACACA
ATATTCCTCACATGAACAAGGGGAAAGTCTATTTGTTCCTTTGAGGGGACGTGCGAGATGATTC
TAATTAATCTCCAGGATGGACGTCCACCCATTTCTTGCATGTAAACTAAATGGTTATAAAAAAA
TTCAAAAAAAATGGCAAGATAGATTAATATATAATATATCACTCTACACATATGTAATTTTAAA
TTCTACTTCTACAAGTTGTAATAAAAATAACAAATTAAACTCTATCTAATATATGCAATTATTA
GTCAAATTTATTATTTTTGTTATAATTTATAGAAGTTGAATTTGAACTTGTATGTTTGTGGAAT
GATATATTACATATTAAGTCGGAGTGCTTGCCCCCTCTCTCTCTGTTTTTTTTTTTGGTCATGT
GACATAGAGTGTCACCGGAACACCACAAATGGCAGCTTCGATCCGTCGTTGTGTGCTCAAGATG
TACTACTGCATGCTGCGGATAAAAACAGGGGAGTACTCCTTCTACCTACACAGATCGATCGATG
AATCGATCTCGCTCGCTTTCCATGGCCCCCAATCATGTTACAAAAAGAAAGGCCCCCAATTGGC
AGCAGAACCACAACTTTTCACTACCAACCTATCCCCTCTGCACATGGACGGCATCTGTCACACA
CTGATCATCATCACTCTCTCCCCCCAGCTCAATCAATATTCCACTAATTAAACCCTCCATTGAT
GATTTTCTATATAACTCACTCGCGGCCACTCTTCCATTGTCGCCTTACTTAACCAAGAAGCATA
GCCATAGCTAGTGATCGATGTGTCCGTCCATTCCTGTATAAAAAAGATAGGCGTTGTAGCGAGC
ACTATCACTAAGCCGTATATAAAGAGAGCAGTTTAGTACTAAAGTGAGTGTGCTAGTGTGAGCT
TAGTGGCAATGGCGATGAGAGGCGGTGGTGCGACGATGCTGTCGTGGTACTTGCAGGTGGCGGC
GGTGAGCTTGCTGGCGATGGCGACGGGGCTGGAGGCGCAGCTGCGGGTGGGGTTCTACGACAAC
TCGTGCCCGGCGGCGGAGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCGGCCAACCCGG
GCCTCGCCGCCGGCCTCGTCCGCCTCCACTTCCACGACTGCTTCGTCAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.403955841
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015