Detail information of AT1G09020_circ_g.19


General Information
CircRNA Name AT1G09020_circ_g.19
ID in PlantcircBase ath_circ_001542
Alias NA
Organism Arabidpsis thaliana
Position chr1: 2904416-2904499  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method circRNA_finder
Parent gene AT1G09020
Parent gene annotation Sucrose nonfermenting 4-like protein
Parent gene strand -
Alternative splicing AT1G09020_circ_g.20
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT1G09020.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCCCCCAAACCTAGGTAGAGAAATTCCACCAACACGAAACcctaaaagcccaaatcacgatc
tacaacgaaattactgaact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTAAAAGCCCAAATCACGATCTACAACGAAATTACTGAACTCTTCCCCCAAACCTAGGTAGAG
AAATTCCACCAACACGAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.112104167
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017