Detail information of Os07g0258400_circ_g.1


General Information
CircRNA Name Os07g0258400_circ_g.1
ID in PlantcircBase osa_circ_033344
Alias Os_ciR11325
Organism Oryza sativa
Position chr7: 8967237-8967821  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os07g0258400
Parent gene annotation OsNramp1 (Integral membrane protein). (Os07t0258400-01);Similar
to Metal transporter. (Os07t0258400-02);Integral membrane protei
n, Metal ion transport (Os07t0258400-03)
Parent gene strand +
Alternative splicing Os07g0258400_circ_g.2 Os07g0258400_circ_g.3 Os07g0258400_circ_g.4 Os07g0258400_circ_g.5 Os07g0258400_circ_g.6 Os07g0258400_circ_g.7 Os07g0258400_circ_g.8 Os07g0258400_circ_g.9 Os07g0258400_circ_g.10 Os07g0258400_circ_g.11 Os07g0258400_circ_g.12
Support reads 2/3
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os07t0258400-03:4
Os07t0258400-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCTTGCTGAGCTGTGCAAGACTGAATATCCAGTATGGGTGAAAACCTGCTTATGGCTGCTAG
CAGAACTAGCTGTGATTGCTTCCGATATTCCAGAAGgagccagcatggaaaaggtttttgtccc
acattggaccaggctttatggtctgtttggcttacctcgatcctggaaatagtaatattctctc
tctaaatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 304
Transcript exons: 8967237-8967315,8967385-8967425,8967557-8967635,8967717-
8967821
GAGCCAGCATGGAAAAGGTTTTTGTCCCACATTGGACCAGGCTTTATGGTCTGTTTGGCTTACC
TCGATCCTGGAAATATGGAGACTGATCTACAAGCTGGTGCCAATCACAAATATGAGCTTCTTTG
GGTGATTTTGATTGGCCTGATCTTTGCACTGATTATACAATCATTATCGGCTAATCTTGGAGTG
GTGACAGGGCGCCATCTTGCTGAGCTGTGCAAGACTGAATATCCAGTATGGGTGAAAACCTGCT
TATGGCTGCTAGCAGAACTAGCTGTGATTGCTTCCGATATTCCAGAAG

Genomic sequence GAGCCAGCATGGAAAAGGTTTTTGTCCCACATTGGACCAGGCTTTATGGTCTGTTTGGCTTACC
TCGATCCTGGAAATAGTAATATTCTCTCTCTAAATTTATTTTCTCACACTCATATGGTTTCTCA
CGCTTGACGAATTGAAACAGTGGAGACTGATCTACAAGCTGGTGCCAATCACAAATATGAGGTA
CATTCTCTAGCCTTTTCTATATGACTTTTCCTGCCATTTATCACAGTTGTCATGTCTTTTGTTA
CAGCGAGAAGAAAGAAACAATTAACTGATATGCTTCTTGATGTGCTCTTTCATATGTTTCTTAG
CTTCTTTGGGTGATTTTGATTGGCCTGATCTTTGCACTGATTATACAATCATTATCGGCTAATC
TTGGAGTGGTGACAGGTAATAAATAGACACTTTCAGCACACAATTGATTTAACATTTCAGTTGG
AAGTAGCAAGTAATGAATGTCAATTGATACAGGGCGCCATCTTGCTGAGCTGTGCAAGACTGAA
TATCCAGTATGGGTGAAAACCTGCTTATGGCTGCTAGCAGAACTAGCTGTGATTGCTTCCGATA
TTCCAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.21516198
Functional Information
Coding potential Y
Potential coding position 8967283-8967391(+)
8967758-8967566(+)
8967248-8967415(-)
8967270-8967793(-)
Potential amino acid sequence MVCLAYLDPGNMETDLQAGANHKYELLWVILIGLIFALIIQSLSANLGVVTGRHLAELCKTEYP
VWVKTCLWLLAELAVIASDIPEGASMEKVFVPHWTRLYGLFGLPRSWKYGD*(+)
MGENLLMAASRTSCDCFRYSRRSQHGKGFCPTLDQALWSVWLTSILEIWRLIYKLVPITNMSFF
G*(+)
MLAPSGISEAITASSASSHKQVFTHTGYSVLHSSARWRPVTTPRLADNDCIISAKIRPIKITQR
SSYL*(-)
MWDKNLFHAGSFWNIGSNHS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017