Detail information of AT3G07130_circ_g.1


General Information
CircRNA Name AT3G07130_circ_g.1
ID in PlantcircBase ath_circ_020235
Alias 3:2256356-2256546
Organism Arabidpsis thaliana
Position chr3: 2256356-2256546  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G07130
Parent gene annotation Purple acid phosphatase
Parent gene strand -
Alternative splicing NA
Support reads 1/1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G07130.2:1
AT3G07130.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTATACCAAGGTGGATGCCAAGAAGCTACTAACCATGGAGTTACCGATCTATCGACTTTAGCC
AAATCCTTCTTTAACCATTCATATTGTTCCGatgtccgttaaagacaatgtcggtaccataaga
ataaagtaattcctccatagcttctttcatacattctgcttctctgtaatgcgctgtataaga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 191
Transcript exons: 2256356-2256546
ATGTCCGTTAAAGACAATGTCGGTACCATAAGAATAAAGTAATTCCTCCATAGCTTCTTTCATA
CATTCTGCTTCTCTGTAATGCGCTGTATAAGAACTATACCAAGGTGGATGCCAAGAAGCTACTA
ACCATGGAGTTACCGATCTATCGACTTTAGCCAAATCCTTCTTTAACCATTCATATTGTTCCG

Genomic sequence ATGTCCGTTAAAGACAATGTCGGTACCATAAGAATAAAGTAATTCCTCCATAGCTTCTTTCATA
CATTCTGCTTCTCTGTAATGCGCTGTATAAGAACTATACCAAGGTGGATGCCAAGAAGCTACTA
ACCATGGAGTTACCGATCTATCGACTTTAGCCAAATCCTTCTTTAACCATTCATATTGTTCCG
Conservation Information
Conserved circRNAs NA
PMCS 0.295114493
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020