Detail information of Os08g0123300_circ_g.1


General Information
CircRNA Name Os08g0123300_circ_g.1
ID in PlantcircBase osa_circ_035685
Alias NA
Organism Oryza sativa
Position chr8: 1284377-1285452  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os08g0123300
Parent gene annotation Conserved hypothetical protein. (Os08t0123300-01)
Parent gene strand -
Alternative splicing Os08g0123300_circ_g.2 Os08g0123300_circ_g.3
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0123300-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCACCATCTTTCTGGGGCCCTGGAACAATTTCACTCCCCGGTTTGATGTCAACTGCTTCTTGC
TGGATAACTCTTCCATCGACAATAATTGCATCCAAGaatatttgtcttgaccggggcatatgac
tccaacaatgcaatctcctcatcagaccgctgtagcgatgaaaaaacttacagtatagcctaca
aaagcaga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 336
Transcript exons: 1284377-1284463,1284775-1284866,1284951-1285012,1285358-
1285452
AATATTTGTCTTGACCGGGGCATATGACTCCAACAATGCAATCTCCTCATCAGACCGCTGTAGC
GATGAAAAAACTTACAGTATAGCCAGAAGTTGTGGAGGCATGAAGCAACAGTAACAACATCATC
CCACAAATTTAAGCATATGCTGCACTTTGCATTCTCAATACCTAGCACAATCTTGATATTATTT
TTGTCCTAGTCATTCAGGCCAGTTATATCAAAGGTGTACAACAGATACCCATCTTTCTGGGGCC
CTGGAACAATTTCACTCCCCGGTTTGATGTCAACTGCTTCTTGCTGGATAACTCTTCCATCGAC
AATAATTGCATCCAAG

Genomic sequence AATATTTGTCTTGACCGGGGCATATGACTCCAACAATGCAATCTCCTCATCAGACCGCTGTAGC
GATGAAAAAACTTACAGTATAGCCTACAAAAGCAGAACTATAAATAAACATCTCAGCTGTACAA
TATGTAGCACTTAAACAGTATTGAGGAGTTAAGTCATCACACCCAACTATCACACCTCTTCAAT
ATTATGTAGGAAGTGATTCCCACCAACTAATTGCACTGTCGTCCTACATTGTGGACAGGCAGCA
CTCTAACTTTTATCACGCGAATTAGCTGAAGACCTTCTTAACCACTCAAAGAAGCAGCCATTGC
TTAAAAGGAATACAGGAATAAGCACCAATCAGAATTTTGAGATAAATCAAAAGTAGCTAGGAAA
ATTGGCAAAAGTACCAGAAGTTGTGGAGGCATGAAGCAACAGTAACAACATCATCCCACAAATT
TAAGCATATGCTGCACTTTGCATTCTCAATACCTAGCACAATCTGACATCGTCATTTAAATAGA
AGTTAGTGACTTTTATGCACCCAGGTTATTGCTGTTGATCAACATTCATTTCAACAAAATACCT
TGATATTATTTTTGTCCTAGTCATTCAGGCCAGTTATATCAAAGGTGTACAACAGATACCCTGC
AAGAAAATGGATAGCATAAATGCATTACATAGTGGTACAGTTCACCTGTCCAACATAACGAAAT
CACAAAAGGAAAACCATTTGTAATTTGGTAAATTTTTCAGAAGCACAATTACAAACATGCAACC
ATAGAAGTTTCACTTTCTAAACAGAAAGGTCTAGGAAACAATAAACATTCCAAATGACTCAATG
AGTACATATATTCAGAGTCATGTGTAAACACTCATTTGGCTTCATAAAGGAATAAAATAGTCTA
TTTAAAAAAAATACAAGACCACTAAATAAACATAACAACCAATCTATGCACAAAATGCCAAACT
CAAAATACATAATTGTCTCACCATCTTTCTGGGGCCCTGGAACAATTTCACTCCCCGGTTTGAT
GTCAACTGCTTCTTGCTGGATAACTCTTCCATCGACAATAATTGCATCCAAG
Conservation Information
Conserved circRNAs osi_circ_017759 osi_circ_009300
PMCS 0.149668905
Functional Information
Coding potential Y
Potential coding position 1285400-1284400(+)
1284428-1284971(-)
Potential amino acid sequence MSTASCWITLPSTIIASKNICLDRGI*(+)
MRRLHCWSHMPRSRQIFLDAIIVDGRVIQQEAVDIKPGSEIVPGPQKDGYLLYTFDITGLND*(
-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017