Detail information of Solyc01g096580.2_circ_ag.1


General Information
CircRNA Name Solyc01g096580.2_circ_ag.1
ID in PlantcircBase sly_circ_000327
Alias NA
Organism Solanum lycopersicum
Position chr1: 87653917-87658652  JBrowse»
Reference genome SL2.50.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Solyc01g096580.2_circ_ag.2
Support reads 6
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACTTTCTAGTGGTGATGTTAAGGACCTTTGTGGGCATTCTCACTGGTCCCTTCACCCTGAGCC
TCTTATCCTTGGCACCACGAACCAAATCAGCGCACActttctcgagattcttaacattcttgga
ggagagagtgatcctaatcttgtgaaccatctctgcaggctcctcaagcccaggcttggttggc
ttcattgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCTCGAGATTCTTAACATTCTTGGAGGAGAGAGTGATCCTAATCTTGTGAACCATCTCTGC
AGGCTCCTCAAGCCCAGGCTTGGTTGGCTTCATTGCTGCATATGCTGCCATCTTTCTGCACAAC
AACAAGCCATTTTTCCATTAGCCTACACAGAAAAAACACACCCAATTTACTGTACTGTATGAAG
ATTACCTGAGAGTGGAGAGAAAATGCTCAGAATTCTGCGACGGCGAAGAGGACTGCTTAAACTT
CTAGCGGAGGCTTCTGTTATTTCTCCGTCTTTTTTTATATACCGTAACCTAGCTAGGGTTTTAT
TTTGTTTCTTTCGGGTTCGGGTTAACAAACTGGGCTTGGATACATTTTCACAAATGGCCCTTCT
TATGCTACTACTATTTAAATTGTATCTACAAAAAGTAAAGAAAAATTATTATAGGTCATTTGCT
ATTTTAGCCCCATTCGTGTTGTTCTTTAATTTTATACATTAAGTTAAATAATTTCTTCGCATGA
GATAAAGTAATATCAACATCTCAATAGAGATAAGTTCGATTGCTAAGAAAAAAAATTAAAGACT
CTTATTTGAAGGGCCAGAGTCAGACAAGAAGGATAGTTTGTACAAAAGGGATATCTTTACCCCT
AGTATTTGAAATTGTCTTTAGTTTTTATATTAATACGAAAATGCCTTCAAGTTTAATAAACAAA
AATTCGGGTCAAAAAATAGGGGAAATAGTAGCGACAATAGCTTAGTGACATGCAAATCATGTTA
GATCGATTTTATTATACCTTCACCATATCTAGATATGATGTGTCAAAATGGTGGCATGCAAGTC
ATGTCAAATTAGTAGGATTTCATGTTATATTAGACTCAGTTGAATAACTTAGCAACTCTGCCGA
ATAATCACAATTACATTTAAATTTGAAAAACTTGCTTAATCTAAGACAATTATTAAATAATAGA
GTATCAACAAGAAATAGTACTTGCTTAATCAACCAAACAACATAAAAAAAGGTATTATTAATAA
TTTGTCTGTGAAAAACATATAAGATAATAAAAACAAGATTACAACTGCAAATGAAATGAAGAAA
TAAAATCTTTTCAGGTTGAGGCGCAGATATCTCACTCTCTTCAAGGAGATTCAAGCTCATTGCA
ATAAACGTTTTCACTGGTCCAGCAGTTGTCTTCTTTGACTTGTCCCCTCCAAGATATAATAGCA
TTCACAAAGTATAACTCAACAACTCTGGACAAGAGTTGAGTCCAAAGTTTTACAAAAAAGAACA
TCCCTTTAACTAATATGAATTCTCTTTTTGACTAACTCTTTCACTCTATGTTTTTCTCTTGTGT
GTTGTGTGTTGCAAATCAAATGAAGACCATCACTATTTATACTACAAAAAGTCTTTCAAATAAT
GAATTGGAAGATAAATGGTATAGTAAATAGTGAAAGTAAATGACCTAGGAGTTACATAAATTAC
AAAAAGTAATGGAGAAAGAAAAATGAGAGACAATCAAGTAGACACCAATTCCATCAATGACATT
TGCATCTGTTGCAAAATTGAAATGCATGTGACTCTAATTTCTAATGGAATAATGCAATAGTTAG
TCACACCAACAACCATATATCAAAAGTCCTCAACGGTCAGTAGATAATACACTTAATTGTAGGG
GTATTAAGAGATAAATTAATAATTAAAAAATATTAAAATGTCCAAAATACTAACAATCCTTTCA
CTCATTTTAATATTAGAAAAGAGAGTCCATTAGCTGAAGAAAGATTACTGTGCATAATGAATGT
GTTCTCTGCATTGAACCTTCATTTAGTGAAACAATAATTTTTATTCCAGAGTCGTAGTGATCTC
ATACTTGAACTATGACTTCTTAAGGGAGATAAAATATCACTGCTCATACATAATAATCAAGGTG
TTGACATGAGCTTTTAAAGCCAACACGTTATGACCATGTGCTATCATGAGTGCATTTGAGAATA
AACATGATTCTCATAGAAAGTGACCCACTTCCACACATCACATAGATGAAATCTGTCGAAAGTG
GTTTCGTAAACTTAAAAAGAACAAGTAACGTTGAGAATTTATTAACATTTAATAGTGAAGACTT
GAAATCACACCAATAATTTAGCTCTGCCAGATGGCACGAGAACAAATATCCTTCTTACACCTGC
CTAGAAGGTGTATCATGTATGTTTGATCACCACACTATCCCAACAAATGAACAGTGGTGTTGGG
AATACTCGTCTTTAGGTGAGAGTGTGAAAGATTAGGTGTAGAACCCCGAACACTTTTAATGAAA
ACTCAACCCCAAACTAGTTGGAGTTTCTCTCTATTAATTTAGCTCCATTCTAATTTGATTATTA
AGTCTACCACAAGAATCCGCCTCTTTGAGACTAGCTATTCCTGTAAAGCTAGAATCTACACTTG
TTAAACAAAATGTCTAGGGTTTACACTTACAACGAATACCTGAAGAATTTATAGTACAGAATCA
AAAGAAATAGTAGTTATAATAAATCCCTCAAGTAGATAGTGCTTTAGTATTCAAGCATAAGACT
CATTTATCCCCTTTGTGGAGTTGAATAGTGATGTGACTACTCCCTCGTGGGTTGAGAAATAAAA
CTACCAGGATGACTTTATTGACCTCCATGATGCTTATCCTTCTCACATAAATCTCAGTTTCTGC
ATTTGTAATCTCCATCAATTATTTACTTCAGAATACGTCGTCTGGGCCTCTCTGTAATATTCAT
CTTCAAGTAAGTCAAAATTTATCTAATAGCTGTTAGAATAGAAATAAGTATTTCCTACTTAAAA
TAGGAATAGGAATAGGAATAAAAATCCTAGTTGAAAAAGTATTCTAAAAATAGAGTCTTAAATC
TAACAATTTAGATAAAATAATTCAAGTGAGTCCATTCAGAGTGAATTAAAGTGTTCTTTGCATT
CTATTGAACAACATCAACAAGGTGCCATTCATAAACCCAGACCAGGAGCCAGATAGTTGGTATG
AGAAAGAAGGTAAAAGATAAACTATTGTGATAAATATTATATTGAACACTGTTTGAACATGACA
AATCAGTGTCACCAAAGACCTGAAGCTATGTGCAGTGCAGATTGGATGCGTCTCCCAACTACTT
TTAAAAAAGAACAAGGTTAAGCAATGATGCTAATTATGACTTTGTCCTGAAATGGGCGGCACTA
AAATTATAAATATCTCGGATTCCTTTTAAACATTATGCTATGTATTATTATACTATTTAGAAAT
AGGAATGAGAAATTTAATATAAGAAGATTGAACTAATTATAAAAAATTTTAATGTAAGAAAATT
AGTCGCGAAATCTGAATGAAAAAATTATGAACTACATTTGTGTCTGAATCAGAAATTATGGGTT
TTGAACTTCAATGGCATGGTTTTCATTTCATATATTTTACTTAATTACAGTTTTTTCCCTTGGA
ACTTCTTATATTCGTGTTTATAGTTCTTTTTTTTTTAGCATTGTATGCTTCTTATATTTTTTCT
TCAATTGCACCTTTCCTTAAAGCACTCAGCGGAATTGCAAGAATTACACCTATCACGAGAGGCA
GAGATAGGGGGTAATGCCTGCATGCTTACTATTGGTCATGTACATTATCATTTGGAAATTCAAG
GTACAAAAGAAAACAATTTGCCAGTATCAAAATTAGTAGTTGGCACACCCTAGGAATTCATGAA
AGTTGCAATCGATTAAACAAACCACTTCGCTTTTATCGAAGTCTAAGATTTTAACAGCAAAATT
GTAATTCAAAAAAACTTATAATACATCAAGTCTGCGGGCAAAAATACCACAACATATAAATAGC
AACTCATCTACCTAAGGACATTGGAGATCTAAGATTCCGCAATAGTGACCTCAACCTCAACACC
GGGTTCAATGGTGATTGAAGTGATTTGTTTCACAACATCTGGTGAGCTGAAAAGGTCAATCACC
CGCTTGTGGACACGAAGCTCAAATCTGTCCCATGTATTTGTACCTGCAAGTAAAGAAAAAAAAA
GATGAGAATAAACTATTCCTGATTTTGGATAACTTCACAGACAATAAATCTCCTACAATACACA
ATTGTTTACTGATGATATCACAGATCAATATAATGAAGCAAAACCAACTACATAGATTCTGCAA
GCTAGCTTCCAAGACAGAGAATATGAGCTTTCAAAAAGAGAAACTAGCAGGAGATGGGGTATCA
GCAACAAAAATAAAATCATTCAAGACAGGCGACAACATGCCCTTGAATTGTACAACGAGTGGAT
GTAATGGAAATGTGGCTTGTGGGATTGGGTTAACAGAGTGGAAGATTCCTGCCATATGGTTGAA
TGGGGATCAAATGAATAGTTTTTCTGACCCAAACACAGCTCAAGCTTTCAATATCTATTTTCAT
TGTTCATGGTGGTGGTTAGCACCCAACATAAGTTATCAACCAAACACATATCGAAACACAAGTT
CATTCATAATCCTATAAATCACAAACTAATACATCTTCCAGTATACAATGTAAACAGTTCAAAC
TAAACAAATGTCTACTAAATGTACTTCTTGACAACACAAGCTCTAGTACAAAACAATAAATGTA
TGGAACAGTAGTACCTTCTCCACAAGGAGACTTTCTAGTGGTGATGTTAAGGACCTTTGTGGGC
ATTCTCACTGGTCCCTTCACCCTGAGCCTCTTATCCTTGGCACCACGAACCAAATCAGCGCACA
Conservation Information
Conserved circRNAs NA
PMCS 1.00345301
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zuo et al., 2016