Plant Circular RNA Database

Detail information of AT2G24120_circ_g.8

			
						 General Information
					
						CircRNA Name
						AT2G24120_circ_g.8
					
						ID in PlantcircBase
						ath_circ_014623
					
						Alias
						2:10251587-10253324
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 10251587-10253324  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT2G24120						
					
						Parent gene annotation
						
							DNA-directed RNA polymerase 3, chloroplastic
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G24120_circ_g.9 AT2G24120_circ_g.10 AT2G24120_circ_g.11 AT2G24120_circ_g.12 AT2G24120_circ_g.13 						
					
						Support reads
						2
					
						Tissues
						seedling
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G24120.2:7
AT2G24120.1:7

General Information
CircRNA Name	AT2G24120_circ_g.8
ID in PlantcircBase	ath_circ_014623
Alias	2:10251587-10253324
Organism	Arabidpsis thaliana
Position	chr2: 10251587-10253324 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT2G24120
Parent gene annotation	DNA-directed RNA polymerase 3, chloroplastic
Parent gene strand	-
Alternative splicing	AT2G24120_circ_g.9 AT2G24120_circ_g.10 AT2G24120_circ_g.11 AT2G24120_circ_g.12 AT2G24120_circ_g.13
Support reads	2
Tissues	seedling
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G24120.2:7 AT2G24120.1:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGAATGCAGGTCGAAACTCGGGTATAGAGTCCCCAGACTGGGTCAAGGGAGGTTGCACATAAGC
TGCTTCGATCAATAGTTCTAGCAGACGGCTTCCAAGctgatgaataggcaagtgggaaattact
gaataaggtgaagggcttttcaaggcttgtgtcagaataacacatgcagctaaacactgaaacg
gatcttca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1044
Transcript exons: 10251587-10252003,10252091-10252222,10252368-10252481,10
252572-10252689,10252831-10252889,10252967-10253036,1025
3191-10253324
CTGATGAATAGGCAAGTGGGAAATTACTGAATAAGGTGAAGGGCTTTTCAAGGCTTGTGTCAGA
ATAACACATGCAGCTAAACACTGAAACGGATCTTCAGCCTTTAACCACCATCGTTTTCCATGTA
TAGGATTTTCAGCTGAATCCATTATATCATCCAAATGGTTTTCCACGAAAGCCAGACGGGCATC
ATGTGAGAGCTTTTCAACACCACCTGCATAGAGGTTTGCTAAATGTATTTTCAGCCAATGCAAG
CCTGACTTTCCAAGTGGTCGTCCTTCAGCAAACTCCAGGGTTCCACGGCAAAGATCAGAACTCA
GATGATTCAGATGAGGATGCATTGGGTATGCACGGCCTCTAAAGTCAAGATTGTGAGGGTAGTA
GAATCCTTCTTCGTCCTTCATTTTTCTAGCCACAGAAAGTTTGAGCTCAACATCACATCTTAGA
GAATGCCTCTCTCTGTTAATCTTGTTGGCCTTTCGAGCACTCCATTTCCAGGACTGGAGTTCTT
CAGGATCCTCAGAGGATGGTTTTTCGGGTATGGGAACATCTTCACGATTAACTAAGCCTGCAAT
GTTGCCTCCATCAGCCCAGAGCCTTTCTACCACATCAAGTATATTCCTATTCACCCTCCACTTG
GTATTCCCAAGTGTATCCAATGCCTCAAATACTCTATGAGCAGTCTTGTGACTAATATCTTTCA
GTGCATCTTGCTGCTTTTTGGATCCATGAGTACGCATGATATAGGAAGGTAAAAACAAGTAACC
ACCCTTGTCATATCCTTTCCATCTCTTTGGTGGCACTAACATCGGAACATAAGGAATTAACATA
TGCTTAGCAGATTTATCTAGTCCTGCAAGAAGGAGCGAGTCACATTCAATAACTCCATACCTCC
TCACCAGCTTAGACCCTGGATATTTAGTCACAGTTTTAAACCTGTGTCTGAATGCAGGTCGAAA
CTCGGGTATAGAGTCCCCAGACTGGGTCAAGGGAGGTTGCACATAAGCTGCTTCGATCAATAGT
TCTAGCAGACGGCTTCCAAG
						
					

						Genomic sequence
						
							CTGATGAATAGGCAAGTGGGAAATTACTGAATAAGGTGAAGGGCTTTTCAAGGCTTGTGTCAGA
ATAACACATGCAGCTAAACACTGAAACGGATCTTCAGCCTTTAACCACCATCGTTTTCCATGTA
TAGGATTTTCAGCTGAATCCATTATATCATCCAAATGGTTTTCCACGAAAGCCAGACGGGCATC
ATGTGAGAGCTTTTCAACACCACCTGCATAGAGGTTTGCTAAATGTATTTTCAGCCAATGCAAG
CCTGACTTTCCAAGTGGTCGTCCTTCAGCAAACTCCAGGGTTCCACGGCAAAGATCAGAACTCA
GATGATTCAGATGAGGATGCATTGGGTATGCACGGCCTCTAAAGTCAAGATTGTGAGGGTAGTA
GAATCCTTCTTCGTCCTTCATTTTTCTAGCCACCTGCAATGATAACCTTTAGTCTATATCTTTT
CCTAGTTAAGTGAAGACGGAACGAAAAGTCTTAAGCAGTAAGAATGTATTTCTTACAGAAAGTT
TGAGCTCAACATCACATCTTAGAGAATGCCTCTCTCTGTTAATCTTGTTGGCCTTTCGAGCACT
CCATTTCCAGGACTGGAGTTCTTCAGGATCCTCAGAGGATGGTTTTTCGGGTATGGGAACCTAA
ACAAAAATAAAATAAGAAAGAGAACAAAAATACGTCAGACACATACCATTAAAACCTATAACTA
TGCAGATTAATTAACTCTTGAAATGAAACAATGAAAGGTAAAAGTTCAGAAATCTCATAACATT
TCTAGTGACTTACATCTTCACGATTAACTAAGCCTGCAATGTTGCCTCCATCAGCCCAGAGCCT
TTCTACCACATCAAGTATATTCCTATTCACCCTCCACTTGGTATTCCCAAGTGTATCCAATGCC
TATTCAAGTTCAATTTCGGAATATTAATATAATACATTACCTGAGAGCAACAACAAAATATATA
TTACAAGAGCGAAATACCAATGTACCTCAAATACTCTATGAGCAGTCTTGTGACTAATATCTTT
CAGTGCATCTTGCTGCTTTTTGGATCCATGAGTACGCATGATATAGGAAGGTAAAAACAAGTAA
CCACCCTTGTCATATCTGAAGAAAATGTCACAGCATTTGCATACGTAAGCACGAGAAACCCATG
GCTAAAAATAATGTGTGGTTCTCAATAATAGGGCATGATTCATAAGGGGATAAAATCTAGAGCA
AAACAAGAAAGAGTTTTTCAAAGCATACCCTTTCCATCTCTTTGGTGGCACTAACATCGGAACA
TAAGGAATTAACATATGCTTAGCCTGCATGAGACAAAAAAACAATAAAAGATCACCTAACAGCT
CATGAATGGAATGATAAAAAAGACATCTTAACTCACAGATTTATCTAGTCCTGCAAGAAGGAGC
GAGTCACATTCAATAACTCCATACCTCCTCACCAGCTTAGACCTGCAAGTTCCAGTGATAAGTA
AACTCTACACCATAAGCATATATCCCAGTTGAGAAAAAAACAACTTTCTTGCAATAGACGGTTC
TATACATAAAACAACTGACTAGAAAAACAAATAAAGAGATGGGTACTCATTTTGAGGATTTCTC
TCACCCTGGATATTTAGTCACAGTTTTAAACCTGTGTCTGAATGCAGGTCGAAACTCGGGTATA
GAGTCCCCAGACTGGGTCAAGGGAGGTTGCACATAAGCTGCTTCGATCAATAGTTCTAGCAGAC
GGCTTCCAAG
						
					

			
		

Sequences
Splice junction sequence	TGAATGCAGGTCGAAACTCGGGTATAGAGTCCCCAGACTGGGTCAAGGGAGGTTGCACATAAGC TGCTTCGATCAATAGTTCTAGCAGACGGCTTCCAAGctgatgaataggcaagtgggaaattact gaataaggtgaagggcttttcaaggcttgtgtcagaataacacatgcagctaaacactgaaacg gatcttca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1044 Transcript exons: 10251587-10252003,10252091-10252222,10252368-10252481,10 252572-10252689,10252831-10252889,10252967-10253036,1025 3191-10253324 CTGATGAATAGGCAAGTGGGAAATTACTGAATAAGGTGAAGGGCTTTTCAAGGCTTGTGTCAGA ATAACACATGCAGCTAAACACTGAAACGGATCTTCAGCCTTTAACCACCATCGTTTTCCATGTA TAGGATTTTCAGCTGAATCCATTATATCATCCAAATGGTTTTCCACGAAAGCCAGACGGGCATC ATGTGAGAGCTTTTCAACACCACCTGCATAGAGGTTTGCTAAATGTATTTTCAGCCAATGCAAG CCTGACTTTCCAAGTGGTCGTCCTTCAGCAAACTCCAGGGTTCCACGGCAAAGATCAGAACTCA GATGATTCAGATGAGGATGCATTGGGTATGCACGGCCTCTAAAGTCAAGATTGTGAGGGTAGTA GAATCCTTCTTCGTCCTTCATTTTTCTAGCCACAGAAAGTTTGAGCTCAACATCACATCTTAGA GAATGCCTCTCTCTGTTAATCTTGTTGGCCTTTCGAGCACTCCATTTCCAGGACTGGAGTTCTT CAGGATCCTCAGAGGATGGTTTTTCGGGTATGGGAACATCTTCACGATTAACTAAGCCTGCAAT GTTGCCTCCATCAGCCCAGAGCCTTTCTACCACATCAAGTATATTCCTATTCACCCTCCACTTG GTATTCCCAAGTGTATCCAATGCCTCAAATACTCTATGAGCAGTCTTGTGACTAATATCTTTCA GTGCATCTTGCTGCTTTTTGGATCCATGAGTACGCATGATATAGGAAGGTAAAAACAAGTAACC ACCCTTGTCATATCCTTTCCATCTCTTTGGTGGCACTAACATCGGAACATAAGGAATTAACATA TGCTTAGCAGATTTATCTAGTCCTGCAAGAAGGAGCGAGTCACATTCAATAACTCCATACCTCC TCACCAGCTTAGACCCTGGATATTTAGTCACAGTTTTAAACCTGTGTCTGAATGCAGGTCGAAA CTCGGGTATAGAGTCCCCAGACTGGGTCAAGGGAGGTTGCACATAAGCTGCTTCGATCAATAGT TCTAGCAGACGGCTTCCAAG
Genomic sequence	CTGATGAATAGGCAAGTGGGAAATTACTGAATAAGGTGAAGGGCTTTTCAAGGCTTGTGTCAGA ATAACACATGCAGCTAAACACTGAAACGGATCTTCAGCCTTTAACCACCATCGTTTTCCATGTA TAGGATTTTCAGCTGAATCCATTATATCATCCAAATGGTTTTCCACGAAAGCCAGACGGGCATC ATGTGAGAGCTTTTCAACACCACCTGCATAGAGGTTTGCTAAATGTATTTTCAGCCAATGCAAG CCTGACTTTCCAAGTGGTCGTCCTTCAGCAAACTCCAGGGTTCCACGGCAAAGATCAGAACTCA GATGATTCAGATGAGGATGCATTGGGTATGCACGGCCTCTAAAGTCAAGATTGTGAGGGTAGTA GAATCCTTCTTCGTCCTTCATTTTTCTAGCCACCTGCAATGATAACCTTTAGTCTATATCTTTT CCTAGTTAAGTGAAGACGGAACGAAAAGTCTTAAGCAGTAAGAATGTATTTCTTACAGAAAGTT TGAGCTCAACATCACATCTTAGAGAATGCCTCTCTCTGTTAATCTTGTTGGCCTTTCGAGCACT CCATTTCCAGGACTGGAGTTCTTCAGGATCCTCAGAGGATGGTTTTTCGGGTATGGGAACCTAA ACAAAAATAAAATAAGAAAGAGAACAAAAATACGTCAGACACATACCATTAAAACCTATAACTA TGCAGATTAATTAACTCTTGAAATGAAACAATGAAAGGTAAAAGTTCAGAAATCTCATAACATT TCTAGTGACTTACATCTTCACGATTAACTAAGCCTGCAATGTTGCCTCCATCAGCCCAGAGCCT TTCTACCACATCAAGTATATTCCTATTCACCCTCCACTTGGTATTCCCAAGTGTATCCAATGCC TATTCAAGTTCAATTTCGGAATATTAATATAATACATTACCTGAGAGCAACAACAAAATATATA TTACAAGAGCGAAATACCAATGTACCTCAAATACTCTATGAGCAGTCTTGTGACTAATATCTTT CAGTGCATCTTGCTGCTTTTTGGATCCATGAGTACGCATGATATAGGAAGGTAAAAACAAGTAA CCACCCTTGTCATATCTGAAGAAAATGTCACAGCATTTGCATACGTAAGCACGAGAAACCCATG GCTAAAAATAATGTGTGGTTCTCAATAATAGGGCATGATTCATAAGGGGATAAAATCTAGAGCA AAACAAGAAAGAGTTTTTCAAAGCATACCCTTTCCATCTCTTTGGTGGCACTAACATCGGAACA TAAGGAATTAACATATGCTTAGCCTGCATGAGACAAAAAAACAATAAAAGATCACCTAACAGCT CATGAATGGAATGATAAAAAAGACATCTTAACTCACAGATTTATCTAGTCCTGCAAGAAGGAGC GAGTCACATTCAATAACTCCATACCTCCTCACCAGCTTAGACCTGCAAGTTCCAGTGATAAGTA AACTCTACACCATAAGCATATATCCCAGTTGAGAAAAAAACAACTTTCTTGCAATAGACGGTTC TATACATAAAACAACTGACTAGAAAAACAAATAAAGAGATGGGTACTCATTTTGAGGATTTCTC TCACCCTGGATATTTAGTCACAGTTTTAAACCTGTGTCTGAATGCAGGTCGAAACTCGGGTATA GAGTCCCCAGACTGGGTCAAGGGAGGTTGCACATAAGCTGCTTCGATCAATAGTTCTAGCAGAC GGCTTCCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.28472958

Conservation Information
Conserved circRNAs	NA
PMCS	0.28472958

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT2G24120_circ_g.8

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