Detail information of AT5G22770_circ_g.2


General Information
CircRNA Name AT5G22770_circ_g.2
ID in PlantcircBase ath_circ_039848
Alias NA
Organism Arabidpsis thaliana
Position chr5: 7579834-7584129  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method PcircRNA_finder
Parent gene AT5G22770
Parent gene annotation AP-2 complex subunit alpha-1
Parent gene strand -
Alternative splicing AT5G22770_circ_g.1 AT5G22770_circ_g.3 5_circ_ag.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 5_circ_ag.11 5_circ_ag.12 5_circ_ag.13 5_circ_ag.14 5_circ_ag.15 5_circ_ag.16 AT5G22770_circ_g.17 AT5G22770_circ_g.18 5_circ_ag.19 5_circ_ag.20 5_circ_ag.21 5_circ_ag.22 5_circ_ag.23 5_circ_ag.24 AT5G22770_circ_g.25 5_circ_ag.26 5_circ_ag.27 5_circ_ag.28 5_circ_ag.29 5_circ_ag.30 5_circ_ag.31 5_circ_ag.32 5_circ_ag.33 AT5G22780_circ_g.1 AT5G22780_circ_g.2 AT5G22780_circ_g.3 AT5G22780_circ_g.4 AT5G22780_circ_g.5 AT5G22780_circ_g.6 AT5G22780_circ_g.7 AT5G22780_circ_g.8 AT5G22780_circ_g.9 AT5G22780_circ_g.10 AT5G22780_circ_g.11
Support reads 3
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT5G22770.3:17
AT5G22770.6:17
AT5G22770.5:17
AT5G22770.1:17
ENSRNA049758111-T1:1
AT5G22770.2:17
at5g03475:1
AT5G22770.4:17
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAAGGTCAAAGACTTACCTGCAGCAACTCTTCGACTATATCCTTTGCATTTGACACATCACAC
ATCCCATATAATAAATCAAGAGCACGCCTACGAATAcccaatgaatttaaagtaagccagcgag
catagctcctggatcatcagctaaagccgctgggcttggcggttgagctacaggtggtgctgga
cctgctgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCAATGAATTTAAAGTAAGCCAGCGAGCATAGCTCCTGGATCATCAGCTAAAGCCGCTGGGCT
TGGCGGTTGAGCTACAGGTGGTGCTGGACCTGCTGCTGGAACTAAAGCTCGAGATCCCATTGGG
ACAGTAATTAGTTGTTCCTTGATAAATTCTTTCAACCTGTGGATAAAAGAGGTCAACAAATGCA
AAAAAAAAAAAAAAAAAACACATGTTCGAGGTTGGGTTTGTGCTAAGAGGCAGAGATATCATAC
TCAAATGTAAGGGTAGGATCTCCCGTGCCTACTGTCATTCGCAATTGGGTTCTGTCCGCTGGGT
CTGTTTCTATTCTTGCCTGACAATAGCAAACCACGGACAATGTCACACAACAGACAGGCTTTTG
AGAACTTTTGGGAGTGCAGCATCACGTTATTACTATAAGTCTCAAGAAATTTTAGGAATTGGAA
GAGCGGCAAGTGCCAAAACCAGGAAGTAAAACTTGGTTATGATCTCACCAAACAGAGAATGGCT
CCTGTACTTTCAGAGTAGAAGGTTGTACTTGCCACTAGATTATTAGGGTTTGGATCCTACAACA
GAAAACGATACAAGTTTAAGTTTGAAGTATACATGTGTGCAACAAGCATGAGGAATGAGATCGT
AAACAAATACTTACAAGCCCAGGGCATATCGTCACATGAAAACTGTTGAACAGATTTGCCATTT
CCGGAAGAGCTAGAGGTCTTACACCTCTAACCTGAAAGAAGTTGCAGATTCATATTATATAACA
CATAAAACTAACGCCGCATTAACGAGCATATGTAGAAGTGTTGAAAATTCTCTATAAGTGTTGG
GGAGAAAGCTAATTCACTAATTTCTTTGAATAAAATATTCTTAGAAGAATTCTGCGCTACTCAA
ATACTTTTAATTTGATATTTGATCAGAGAAGCTGTGGAGATACATACCACTTCCTGAAGTTTCA
AGGGTGGACCTGAGATTGCTCTCCATTGCGGGAAGAACTCTTCAGATGTCAATTGTAGAGGTTG
AAGAAACTTATTTAAGGTTGCTGGGATCCGTAATTTGGCACTGACCTATAAAAGATTCAGCATG
TCAGGTACACTAGATAAATTATTCACCAAAATAAGCTAAGGACGGTTGCAGTAAGTACCACGTT
TGCACCAAACTTGTAAGAGAAATCCAAAACCGCAACATCCCTGCTAGGGCGGATGTTCATCACT
TCAAGTGGAGATTGTACCTATGACCATGAAAGAAATTGCAACACTTACTAAAGTACGCAGAAAT
GAGTAGAAATTGACCGATTGTGTGGTAAAACTGAAAACAAATCAACCACAAAAGTACCTGTGCT
CGAGGAGGAATTGTATCAGGTACTGGAGACAGATCCAGTCTTAAGTGGGCAGGGGGTAGTATCA
GAGCTTGAACTGATGTAAGTGGAGAAGTATTCTTGTTTCCCATGAAGAGAACAAGTCTACCATG
GTGTCCTCTCCATTCAGCTTTGATGCCAATCTGAGGAATACAAACAATCAACAAAATGGGGAAC
ATAAGAAAGCTCGGAGGCTTGTCTGCTGCATACTTGAATAAATAAAAGCACAAACTAGAAAAAA
ACAAACCTGGATATGAGGATCCTCGTATAAGACACCACTGTCTTTCAAACATAAAGCATGAAAT
CTCTCAGCAATATTTCCGATAAGCTGTAAAAGAAAACAAAACAGTATAAGAAAAAAATTCAAGC
ATGCAAATATAAAAATGGTACGGTTTCTTTTATTATGGATCTTGAATTGTGAAACAGAACATCT
CAGGTAGCATTCCACCTAAGTAAACGTTATATACCATTTCCAACTAATAGATACAAAAAGACGA
AACAGAAAAAAATATGGCTATAGGTAAAAAAAAAAAAAGGGAAATAATGAGCTAGCAAAAGTAG
AAGTATAATGCTAAAACCTACTATGCCAAAGAAAGTAAAGGAATAGGAAAAGATTACCTCCACT
GTATTGGTTTGCTCTTCAACAGGTACAATGGCGGAACCATCAACTTCATCTGGAACTCCTTCTG
CCCCTACGGGACCATGTTGTTCATTTGAGACAGCTCCAGGTGGAGCCTCTATTGCAAGAGGACC
GAGTAGGTCACTAAGGAGATCAGGTGATGGAGTTTGTGGATCTATATTACTTAAAGTTCCATTG
GGATGTGAGAGAGATCGAGCCACTGACTCAGGGTCCTGCTAGACATGCAATGAAAAACAGACTG
TCAGAGATAATAAGATAGAAGTATGTACTATATAAAGGCAAGCACATCAAAGATGTCTCGTCAA
TTGGGGCCTAGAAAGAGAAGAACTCACCGTGCTTCCACTTAAAATTGGAACCTTCAAAGGTGGT
GGTGCCCCATTAACAGGCTGTTGGTCAGCCAAAACCATAGCATTTGAAGGCTGTTGTTGTGCTC
TAAGTTTGATGGCACTCTGGTCTGCGGTATCTTCAACGTTTTCTGCCTTTTTAATCAATGAAGA
CTATGGAAGAGACACGGAAAAAAAATCCAGCATCAAAGTCGTTTAGCACAAACTTCCCGTCAAA
GTAACTTTCATAGAATCATAAAATAATTTTACAAACCTGGCGCTCCGGAAATTTTGGCATCTCA
GCCAATACATCCATAAAGGCAGGCCCTTTTTTACTCAATTCAAAATATTCAACTGCCCTCTGTT
GTATCTCCACATCGATACAACTCTCATATCTGCGAAAACAAAACTCATTTAGGAAACTTCATTT
GGTTACCAAAAAAGACAGTACATATGATGACAAGCAAAACATTGAGGAAGGACAACAAAGTTAG
CAAGTCTCACTTCTTAAATACAGCCCAAACTTTTTTTTGCAGTTCTGGATCCGGGGGTTGAGCG
TGCATAAGAAGCTTTGCATATGTGGAAAGAAGAATAGGAATGGTGGGAGTCCTGAGAAAAAAAA
CGAAAAAAAGCTATTAAGACATACCCAAAGACGAGAAGAGCGCAATTCAACATTTGTGTTGTCC
TTACGATATTGTAGGAAGCTTCTCATGTAAGATGCTAAAGAGTTCACTTGCACTGCATCCAGGT
TGTCTAGCTAGAAGGTGACCATACTCCCCCAAAATATAAGCACTGACCTGAAATTCCGAAAGAA
ATTATAAGCATTGTTAATTTGTATTTTGCAAAGAATTTAGATACAGATAAGATTTTGTCAGCAT
GTGTAGCAAGGTAGTAACTCTAAATTCCCAAATTAAGCAACAACAACTTAAGGAAGGATTGTTT
TAGTTTTATATGTTAACTCTGGTTGTTAATTTTATCACATGGCTGATACTCTGATTTTGAACAA
GGCTTCCGAAGCAACGACTCGTTTCTATTTGTGGATTTGCTGAGTAGTGAGAAGGGTAAGATGC
TGACTGGAGAAGCTGCTTTTTCAAACCTAAGTTACTTGAGAGAGAGACCAATGATCTGACTTTA
GGAAGCCTTGCTCAAAATAATAGAATCAGCCAAGTGATAAAATTTACCACCACAGTTAACCTGT
AAAACAAAAACAAACCTTCCTTAAGGTGTTATCTGCAATATAAGGAATTTGTTATGGGAAGCGA
GAATGTACAACCTTCACCATAGTCTCATGTATTGCGATTTTGTCCAAATATTCTCTTGCTTTTG
ACGCGGCGTAAGGCTGTCAGGTCAAAGAAATATGTAAGCAACTTTGAATGTCATAAATAGGATA
AACAATATATTTTTCCTAACAATTATATAAACCTGCAGGTCTTCATTATTTGTTACAAACTGAA
CCACACGAAACCATATGTCATCGCTAACAAAATCCCCAGCCTTGTCGATCAACTGAAGGATCAC
ATCAACATACCTGAAAACATCAAAATTAACATCTTTAACCAGTTGATTTGCAAGGATCTAAAGG
TCACACCAAATGGATAATGCATGTTACTGTAACCAAATTTGTGTGCATGAATGAAGTGTACATA
TACTTCGTATCGAGTTATCCTCACCATGATAGATCAGGAGCAAACTTCTCAGCAAGGATAGCAG
CTTTAAGTGATAATTCTTCCCGCATGGAAAACTCTGCTGTGCTAAGATACTGCAATATATTTTT
AGCTTCCATGTAAGCTTAAACACTACACAACTTAATCCTTCCTTTCTGTTAAACTTCACAAATC
ATAAGGAGACTAAAAATCAAGAAATATTAATATAAAGTAAGGTCAAAGACTTACCTGCAGCAAC
TCTTCGACTATATCCTTTGCATTTGACACATCACACATCCCATATAATAAATCAAGAGCACGCC
TACGAATA
Conservation Information
Conserved circRNAs NA
PMCS 0.116484502
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017